RnoINT0147526 @ rn6
Intron Retention
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45913905-45917745:+
Coord C1 exon
chr3:45913905-45914005
Coord A exon
chr3:45914006-45914617
Coord C2 exon
chr3:45914618-45917745
Length
612 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
TCTTATGCTTTCGTATGAAGGCA
3' ss Score
6.45
Exon sequences
Seq C1 exon
GACTTTGGCTTGGCAGAAGAATTTGCTTCAAAGGCTCTGGAACTGAAACCGAAATCCTATGAAGCCTTTTATGCCCGGGCAAGAGCAAAAAGGAACAGCAG
Seq A exon
GTACTGTCTGGGGTCACCCACGTGACTGCTGGGGCATTTTCCTAGGAGGTCAAACCTGCTAGTTTGGTCTGAGGGTGTTTTCCTTCATCAGAGTTATTAGACACTTCTCATTGCTTTCAGTAAAAAGAACAGTAGCTTCCCAGAGGCACGGTCGTGGGAGTTACTATTAGTGGCTGATGTTTTCTTGACATTCGGGTATCTTCCTCACCGCGCCCCAGCATAGAACACCTGCTGAGTTCCTGTCTCATAGAAGACGGTCAAACAGGGGTGACAGAGGAACAGAAGAGGGTTATGTCTGAGTTAGAAAGGGACATGAGGAGGGCCAGAGAAGGCCTCAAGCAGAATCAGCATTTAGAGGGACAGGGTTCTGTGAGCAGGATCCTGGCACCCTCTACCCTGGGGTCTTTATAGACACATCAGAGATGCAGAGTCACAAAGCCCCGGGTTAGAGTGCTGCACTGTTCTTGGCTCAGCAGCTCTGGGCCAACCGGGACTTAACCAGCAAGTCCTTGGACCTCTCCCCTTTCCCTGCAAGGACAGTGAGCTTAGGGACGGTCCCTCCGGAGCATGTCACGTGTGGTTTCTAATTGTATCTTATGCTTTCGTATGAAG
Seq C2 exon
GCAGTTCCTGGCTGCTCTGGCTGACCTGCAGGAGGCTGTGAAACTCTGTCCCACCAATCAGGAAATCAAGCGGCTTTTGGCCCGTGTTGAAGAAGAGTGTAAACAACTCCAGAGGAACCAGCAGCAGAAACAGCAGGCACCCCTGCCGGCTCCACCCAATGACTCTGATAATGATGAGGAGGCCCCAGCCTCTAGTCTAAAAGACCACTTCCCCATTGAGGAGGCAGAGGAGGAAGACACCTCTTCACAAGAAGAGTCCATTTCCCCGACTCCCAGATCCCAGCCACCACCATCTGTCCCTTCCCCATATATCCGCAACCTTCAAGAGGGATTACAGTCCAAAGGCAGGCCAGCGTCCCCACAGAGCAGGGCAGGAATCAGTAAGTCCCTGAGAGAGACTGTAGCTCAGCCAGGTTTGGTTATGCAGCCGACCAAACAGGCGCAGATCGTGAAGACCAATCAACATCTAGGTTCTGGGCAATCCAGCATGAGGAACAGTAACACCAAAGTACAGGTCTCTTCTCAGAACCCTCCCCCAAGCCCAATGCCAGGTAGAGTATCTGCAGCCCCTGCCGTGAGCAGAAACCAGCATTTAGAGGGAACGGGTCCCTTCAGTACAGGAACTGGTTGTGGTCACTTCGGGGATCGGCTGGGCCCCAGCCAGAGCCTCCAGCTGCAGCGCGGTGAGAGCGGCACTGCGTATCCTCTCCCGAGCAAAGTCAAAGCAGCCGAGAGGCTCCTGGCTCACGCCTCTGTGGCTGTGGACATGGCCCCTCCGAGCCAGGGTGGACCAGTGAGCTGCAGCGATGTGCGGCACCCAGCTTCCCTCAGCAGCTCCGGCTCGTCCGGCTCTCCATCCAGCAGCGTAAAGATGTCGAGCTCCACCAGTAGCTTGACTTCAAGCAGTAGCGTTTCAGACGGATTCAAGGCCCAAGGACCAGACTCTAGAATCAGAGACAGAGGTACAACTCAGGTGCAGGGTGGCACTGCCGAACACAGGCCCCGCAACACTCCATTCATGGGCATCATGGACAAGACCGCCAGGTTCCAGCAGCAAGTCAACCCTCCGAGCCGCTCCTGGCACTGCCCGGTGACAGAGGGACTACTGACAAACACAGCCACTGCAGCCGGCCTGCAGACTAACTCTGAGAAACCCGCCCTCAAGCCCGGAGGATATTGTAGCCAAGCCAAGCCGTGTTCAGTTCCCCCCCTGGGCATGGGTGTCCACAATGGGGCTCAGGTGAAGGAGCTGGAAGAAAATAAGTGCCAAATTCCAGCCCTCTGTCAAGACAACAGGAAAACTAAGGGTGTGCCCCATCTCTACCCGGAAGGCGTCTCTAAGCAGCCGCTTCATGTCAGTACGGAAGCCCACAGGAGCCACCTCACTTCAGCGAAACCAAAGCGATCGTTCATAGAGTCCAATGTGTGAGCCTTAAGCAACCCCTGTGTAGAATCTGGAGTGCAGTCTGTTGGCTCGTGGTGATAAATAATGTCTTTTTTTCATAATAAAAATTACCTGTTAGCCATATTTTCCACCTCTTGGGTGGATCTGATGCCATTGACATATTAAAACTGTAGGATAAAACTATAGTTAAGTAGCTAGAAATCAGCCATAAACAGAAATACTAAACAGCATTGAAAACCGTTGTCAGCTTTTATCTGGCGATTTAAAGGCTGCCAAGAAGACATCAACCAATGCCGTTCTCTTAGGAAATCATTTGGTTTGCTAAGTGTAAGCGGAAAAAAAGAGAAGGGGGGGGGGGGAAGTCCACTGGTAAAAGTTTTTTAACTCCTGACGTCATAATATCTCGAAGTGTATTCTGGAAAAGATTGGGGGCGGGGATTTTTTTAAGTTCCAGATTCCTTAAGTCAAACCTGTCCTTACATATGTGTGAAACTTGCAACCTGAGTGGTATCTAGCTGGATGTCAATGTGACTTTTTTTCTGTCAGTGAAATACAAGGGCACCCATGTATCATTCCCGTCATGGTGGTTACGCAAGGTGACCAAACACCGACTTCCATGATATGGTCATCTGTAGAGTATTTTTATTTTATAGCCCCCTTTTTGGAACTATATTTATGCTTCACAGTGTTACTGAGAAGAGGGAACAGGCTAGCTAGAATTTTGACTGGTGTCCAGGTCAGAGTTGGGCAAAAGTCCCAAAAAGGGCACTCTTAGTGGCGGCAACAAATTAGCCCTAACTGGTTCCAAAAGTGTTCTGGACAGTGACCGTCCCCGAAACGAGCCTCCAGTGTCCTGTAGGGACAGTGGTCAGACAGGATCCTTGAGGTCTGGGTGATGGTTTTGTTTCCTTACGCAGCCCGCTGTTTCATAGTCACTTGTTATGTATGTATGTGTATATATATGTATATATATAGCCCATTTTATTCAGGCTTGTAAATAGAACTCAAAGGAAGCTAATCTGAAGACACACAGCAGGACCCCGCCTGCCATCTCTCCGCATGTTCTTTGTGAGCGCTATGCTGGTTACCACACAGAACGATGTGTTATCATGGCTTGTCACAGAATACCCGCAATGGCACTTTATCTCATTTGTACGGATGTACAGACACCTCTGAGGTGCTACTTAAATCCAGGCTGACATATTTTTCATCTGTAAAGATAAGGTACAAGAATGAACCTTGGTTTGAGGTATTTTTATATGAAAATGGTGTTATTTGGAAGATGTTCAAATGCTGGTTTGAGAGAGGTGGGGGGGCAGTATTTTATATGTCGAGATGTGAAATGTATTTTCTAGATCGGGGAGAAGGAAGTTCTATATTTGCAGAATGTTTTAGACATGAGTATCCACGATGCTCCTCTGAACATCATTAAGGTTTTGTATGGAAAGGAACCTTGCAGCGTCATTCAGTGTGTCTGTTCCTGTGTGTTGTATGCTTTGTACAAAAAGCTAGGTCGTTGTTCTAAGCTCTCTCTGAGTTCCGCTTTAACTATACGGCTTATTTATTGTTTTCTTTAATATTTGTGAACGTCTTACTCTTTGGTTATGTAGTTTGTTTCTGCACAACTACTGTACTTTTCCACACAGAATAAAGACCATTACTTCACGTGGGTTGGCATTCATTGCTCAGCGGGTAAGTAGACAGGGACACCTCTGCCATAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394:ENSRNOT00000038983:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.884
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
A:
NA
C2:
PF134281=TPR_14=PD(65.9=6.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAGCCTTTTATGCCCGGG
R:
ATGGGGAAGGGACAGATGGTG
Band lengths:
351-963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]