HsaINT0163599 @ hg19
Intron Retention
Gene
ENSG00000115183 | TANC1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:HGNC Symbol;Acc:29364]
Coordinates
chr2:160085307-160089170:+
Coord C1 exon
chr2:160085307-160085412
Coord A exon
chr2:160085413-160086088
Coord C2 exon
chr2:160086089-160089170
Length
676 bp
Sequences
Splice sites
5' ss Seq
ACCGTCTGT
5' ss Score
-0.97
3' ss Seq
CCTTACATTTTCCTACAAAGGCA
3' ss Score
6.85
Exon sequences
Seq C1 exon
GACTTTGGCATGGCAGAGGAATTTGCTTCCAAGGCTCTCGAATTGAAGCCCAAGTCCTATGAAGCCTTTTATGCCAGAGCAAGAGCGAAGAGAAATAGCAGGTACC
Seq A exon
GTCTGTGGTTATCTTTGTGTCTAGAGCTTTTTTTCTTGTGGGATCAAACCTGCCTGTTGAATTTGGGGAGGTTTTGCTGCAGAAGTGTTGCTCAGGTGCCTCTCATCCTTTTTAGTAGTGAATTAGTATTACTACCTGCTTCCAAGAGGCATAGTAGTGGACATTATCAGTGATGAGTAAACTTCTATTTTCTCCTGACGTCTCAATAATCATTCCTTCCCACCCCTCCCCCCACGTGAAACTTACTGCAACATGAACTTCCTACCTAGTTTAGTCCATATTTCAAGGAAACTGCCAACTAGGGACATTAGGAAGTTCAGAGGTGGGGAAGAGTGATATAAGCCTGTTGACTGAGAGATGGGCACAGTGTTACCATGGGATGGTAACAATATTAAAAAGATTCTGGCGCCCACTGATTCATGCTTCTCCCTATTCCCAGTCCAGTGGTCTTTATGGAGAGCAGGGCTGTAGAGTCCCACCTACCTAGGTTAGAATTCAGCACTGCCACTTAGCTGAGTTACTCTGGGCTGGTTAAGTGGGTCCTGGCCACCACCGTAAGTGTTCAAAACTCACTTGCTACCTTCTCTTTCCTTTGAGCACAGCTCTTTTATGAACAGTTACACTCTGAGCATGTTCGTGTGTGGTTTGTAATGTTACCTTACATTTTCCTACAAAG
Seq C2 exon
GCAATTCGTGGCAGCTCTGGCTGACCTGCAAGAGGCTGTGAAACTCTGTCCCACCAATCAGGAAGTCAAGAGGCTTCTGGCCCGCGTAGAAGAGGAGTGCAAACAACTCCAGAGGAGTCAACAGCAAAAACAGCAGGGCCCGCTACCAGCTCCACTCAACGACTCCGAGAACGAAGAGGACACCCCAACCCCTGGCTTAAGTGACCACTTTCACTCTGAGGAGACTGAAGAGGAAGAAACTTCTCCCCAGGAAGAATCTGTTTCCCCAACTCCCAGGTCCCAGCCATCCTCATCTGTCCCTTCCTCATACATCCGAAACCTTCAAGAAGGGTTACAGTCCAAAGGAAGGCCGGTATCGCCACAGAGCAGGGCAGGAATCGGCAAGTCCCTGAGAGAGCCTGTGGCCCAGCCAGGGCTGCTCCTGCAGCCCTCCAAGCAGGCCCAGATCGTGAAAACCAGCCAGCACCTGGGCTCTGGCCAGTCGGCAGTGAGAAATGGCAGTATGAAAGTTCAGATCTCTTCTCAGAACCCTCCTCCAAGTCCCATGCCAGGGAGAATCGCTGCCACTCCTGCTGGGAGCAGAACCCAGCATTTAGAGGGAACAGGTACTTTCACTACAAGAGCTGGTTGTGGCCACTTTGGGGATCGGCTGGGCCCCAGCCAGAATGTCCGCCTGCAGTGTGGTGAGAATGGCCCTGCACACCCTTTACCAAGTAAGACGAAAACCACAGAGAGGCTTCTGTCTCATTCCTCCGTGGCTGTGGACGCAGCCCCTCCAAACCAAGGTGGGCTGGCGACCTGCAGCGACGTGCGACACCCAGCTTCCCTCACCAGCTCAGGCTCTTCTGGTTCTCCATCCAGCAGCATAAAGATGTCAAGTTCAACCAGTAGTTTGACTTCGAGCAGCAGTTTTTCAGATGGCTTCAAGGTCCAAGGACCAGATACTAGAATTAAAGACAAGGTTGTAACCCACGTTCAGAGCGGTACAGCTGAGCACAGACCCCGCAACACGCCGTTCATGGGCATCATGGATAAGACTGCGAGGTTCCAACAGCAGAGCAATCCTCCAAGCCGCAGCTGGCACTGTCCGGCACCAGAGGGGCTGCTGACAAACACGTCTTCTGCAGCTGGCCTGCAGTCTGCTAACACTGAGAAGCCCTCTCTCATGCAAGTGGGAGGATATAATAACCAAGCCAAAACCTGTTCTGTTTCTACCCTGAGTGCAAGTGTCCACAATGGGGCACAAGTGAAGGAGCTAGAAGAAAGCAAGTGCCAAATTCCAGTCCACTCTCAAGAGAACAGGATAACTAAGACTGTTTCTCATCTGTACCAGGAAAGTATCTCCAAACAGCAGCCTCATATTAGTAATGAAGCCCACAGGAGCCACCTCACTGCAGCCAAACCAAAGCGATCATTTATAGAGTCAAATGTGTGAACCTTAAGAAATCCCCATTTGTGGAATTTGGAAACGTGTGTTGACTCCTGGTGGTAAATTAAATAGTTTTTTTCATCAGAAAAATTATTTTTTAGCCATTTTTTTTCTTTGGGGTGGATCTGATGCCATTGATATATCTAAAATGTGGGATAAAACTTCTTTAATAGCTAGAAATCACCATAAATAAGAATGCTAAACAGAATTGAAAATTATATCAACTTAAAATTTTAAGACAGCCCAGAAGACATTAATGACTCTCACTTATGAAATTGTTTGGCTTTTGCCACTTTCTTCCTTGCCTTTGCTATATGGTAGAATCACAGAACTTACTTAGAGAATAAATATGTCTATTGTTCAAGAGTAACAGGTTTAACTCATGACCAAGTGATGTACATCCAAGTGATGTATTCTGGAAACGATGGAATTTTACAGTTACAGTTCCATTGAGTCAAATCCCATTTTATATATACATAAAAATTAAGTTCTGAGTGAGTTCTAGCTAAATATAAGTGCGACTGTAAACGCAGCCAATTTTTTTAAGCAGAATATGAGAACACCTAAGTATTCTCTTCATAGCAGTTCCTATAAAGGGATTAAACACTTATTTCTGTGTTATGGTTCTTATTCATATATTTTTATAGCACTTTTGGAACCTATATTTGTGCTTGAAGGTGTTTTTGATATTTGGAAACAGTATAAGCCATTTGGAGTCATGATTGGTGGTCAAGTGGATTCAAGCTAAAATACTAAGACCAGCATTCTTAGTGGCGCTTATAAATTAGCTCTCACCTGGTTTCCAAACTGCTTTTAACAATGGTAGTGCTCCTGGAACAATCCTTCCAAGCTCCTCTAAGGACAATATTTAATTCAGATACTAAAGGTAAGACTGGTTGTTACTTTTGTTTTGTTGTACAATTAGTACTTTATAGTCACATGTTGTATATATTAAATAGCCCAGTTTTATTCAGACTTGTAAATAGAACTATTTCAATGTAGTTAATCTAAAAACAAAAAAGAAAACCCCAGTCACGATTTGCATGTTCTCTGTAAGCTTCATCCATGCTGGTTATTGCACTGAATGATATATTATTAGGGCATGTTAACAGTATACCAGTAACAGCACTTTATCTCATTTATATGAACACCTTTGAGGTGCTACTTAAGTCCAAGCTCTGATGTATTATTCATTTGTAAAGATAAGGTACAGGAATGAACCTTGGTTTAAAGGTATTTTTATATGAAAATGGTGTGTTATTGGAAGATGTTAAAATGCTAATTTGAGAGAAGTAGGAGTGTATCTGTTTTATATGTTGGGATGTGAAATTTATTTTCTAAAATTGAGGAGAAGGAAGTTATATATTTGCAGAATGTTTTAAAGTGAATTGTTGTAATGAAGTTCCTGTGAACATCATTATGGTTTTGTACAAATAGGAACCTCTGATGTCATTCTTCAACGTTTGTTCCTGTGTGTACAATTGTACTTTGTATGAACAGCTTTATCATTTTTATAGGCTTTCCATGAGTTTTGCTGTAACTACTATGGCTTATTTATTTTCTTTAATATTTGTGAAAGTCTTACTCCTTTGTTAGTTTTGTTTCTGCACAACTACTGTACTTTTCCATATGGAATAAAGACTATTAATAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115183-TANC1:NM_001145909:26
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.0=47.1),PF134281=TPR_14=PU(31.8=41.2)
A:
NA
C2:
PF134281=TPR_14=PD(65.9=6.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAAGTCCTATGAAGCCT
R:
GACAGATGAGGATGGCTGGGA
Band lengths:
358-1034
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)