DreINT0160147 @ danRer10
Intron Retention
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11801204-11806210:-
Coord C1 exon
chr6:11806110-11806210
Coord A exon
chr6:11803270-11806109
Coord C2 exon
chr6:11801204-11803269
Length
2840 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCTGCTTTTCTCTTTCTCAGGCA
3' ss Score
11.15
Exon sequences
Seq C1 exon
GATTTTGGCATGGCTGAGGAGTTTGCTACCAAAGCTCTCGAACTCAAGCCAAAGTCCTATGAGGCGTTTTATGCTCGTGCCAGAGCCAAAAGAAGCAGCAG
Seq A exon
GTAAACAACCTTCATGCCCGTTTTGATTATGTGAATTGATTCTGAGAACAGAGAGATATTCCTGTATTTTTGGGGCTGTTTTGGTCATCAGATATACTGTGCAACATAACACTAACATTAGTAGTTCTTTTTCACAAATCGGTTGGGAAATTAGACATAATTCAATGCAGAAGACAGTGGTCTGATTCATGCTCTGAATTGTTCAGACATCTCTGACTGAATTTAAATCAAGCTTGAAATGAGTCATGAACTGCTGCTAATGTGTTATGTCTACTTTTCGAAGATTAAACTAGGTTATTGATGCTATCAGGTACAGTACAATAAGTTATAAAATGGCTACCATGATTATTTTGCATAAAAGTGTGATTTTTATTGATTGTGGTCATTGGAGAAATGTCTTTACTTTAACAATGTAGATCCATCTTGATTTAGTAACACAAATGTCATTTTATATGTGGGGTTTATCTGACCCAGTCTGTTTTTCCTATTTATCCTGAACATTAACAGACTCTGCATAATGATAACTGGTAAAACCTTTAAGAGCTTATTTAAACATGCTATTTATAAAATAATATTAAATAATATATGTTCTTATAATTACAGTAATTAAAAAAAAAGAAATTTTCCATTTAAACAACATAGACTTGGTAATGTATGTTGGATTAGTGTGTTTTTTCAGCAAACACTGTAGTCGTAATTACATTTTAAAGCACATTTCATCACAGAGAAATTAGTTTGAAGGTTTACAGAGTTAGAAGAGTCGCAACGAATAGAAACATAAGATAAGCAAATTTATTCTTTAATTTCAGAAAAAGAAAACTGATTATCAGCTTTTTTGTAGTACAGGCTAGGAGGATTAAGTAAAACACTGGGGAAAATGTATCTGTGGGATTTAGACTTGACATTTGGCAACCCTAAGCATGAAAGTTTGTCAAGGCTTGTTACTAATGCAAGACAATAGAAGCCGGCTGCATTTTTGCTTGGACAGGCATTTTAATGCAACTTTTTTTGTACTTTAAATTGCAAGAAGATAAGAGAACTCAAATGTGTGTGCTGTTGAGAAGCAGCTTTCAGTGCAGGTTGTTAGTATTGAACCCTGAGGTACACCTGTTTCCTGATGATACTGCATTGTTTTCTGTTTACCTGTCACTTTTGTCTGTGGTGTTCTTGTCTCGGCCTTGATGATGTGTTGCATAAAATGATACATCTCCATTCCATCTGTATTATCACATAGCCCACCACAAACACACACAAACAGCTCAGATCAGGGCTTCCTCCGGTTGTTCACACTAAATGACGTGGCTAGTGCCTTACTAACTGTGCAATTGCAATTAGGGACATGGCCCTAGAATGAAATTTAATTCTGGATAAACACCCTGATGGCTTGTTTCTATAACTAGCCAGTGTCAAAGTCCCTATTTTGTCAATAGGTGTTGTTGGATACTTTTTGTTTAATGATCATTTGGATTAAAGAAAATCTCTTAATTCATGTACCCTTTATTTAGTCATTTTTGAAGTTCCATTCCATGTTCAATAATTGGGTTGTTGTGCCCTGGCCTTCAACTACGGCCTGATTCACACTGTTATGGCTCCTTCTGCAGGTAGTGGGTCCACAGAGGGATGTTCCCACATCTCATGTGAAGACTGGTTCATACTTGTGCATCAAACAGTTGGTGTGACCCACGGCATCTGCCTTGCGTATAGTCGTGCATGTATAGTTCTGCACGCTGTTTGTGTTGCTCTGCATTAACACATCCAAAATGCTAGCTGGCAGCAGGTTTTTAGGATCCTCTATAGAGGTTTTTGCAGGTGTTTTGTTTTTTATAAATGTTACCTTAATCTACAAGTAGATAAAACTCGCTCTTTCAGAGGCGGGAACTGGCAAACGTGCAACAACTGTAATCATAAGGTAAACACAAAACAAGTTTCCATCTGGAGCTCCTTCGAAGGAGTCAACGCTTGTAAACACTCGCTCCATTGGGCTCGCAGCTCTCAGTACTGCCCACACTCATCACAGCTACTAAGTTGACCAATCACAAAGCTTGCACTACGTGTGGTTACGATGCATAGTTCCATTTTTTGAGAGGTGCATGTCAGCGTTGGCATCAGCCACGGCGAGGGTTATGCAAACTGTGTGAAGGCTTTGCCGGATCATACGAGTGCGCTTTACACAGAAGTAAAAAATCAGCCTCGAGCCCTGACTCCACAGGCCAGGCTTTAGGTTGGGGCCTTGGTTGCACCATAATTGGGGCAACATCTCAGTCTTCCATTTTATCAAACTCGTATATTGTAGGTTTTTGAACCACACTTAGTCTGGCCTGTCGCCCAGAACCATTTTACCTTGGGAGATCCTACCAGGGACATTCAGCCCCCAACAACATGAGCCCTAAAAATATTTAGGCACTCAAACTCCTCCACCATAAGTCACTGCTCCTCCTCATTAAGAGAAGCCAGATGAGGTGACTCTGGCATCAACAATTGATACCTCCTGGCCACCTACTGTACCTGGGGAGGTGGGGGAGGCCCAGGACATGCTGTAGAGACTATTCTTCCTGACTAACACTTTAGTTAAATGTACAGCTGATAAGAAGAAAAACTGTTAAATCCAGCCTACACTAACCCACTTTCTATTCAGTTGCAAGACGGCACCAAACAACCAAGAACAGTGGCTTGGAGAAGCATATAAATATAGATCAAGATGATTTGAAGTACCCAGATGAGCATGTGTTACTGGTTTCAATGGTTGTTGTGTGGGAATAATATTCCTAGAAATGTTCCAGAGTGCGATGTAATAATAAAGATGAAATATTCATCCGTTCCTCTGCTTTTCTCTTTCTCAG
Seq C2 exon
GCAGTTTGCAGCCGCACTGGCTGATCTCTATGAAGCGGCTCGTCTGTGTCCCAGTAACCGAGAGATCAGACGTCTGCTGGCACGAGTGGAGGAGGAGTGCCAACACCTGCAGCGGCAGGGCTCTAAACACCCGACCTCTCATGGCAACCCCTCACACCACGAGGACGACAATGAGAACGACGACGAGGAAGATGATGATGAGGTTGAAGATGACGACCAAGACATTGAGAGTTTGGAGAAAAGCCCAGACAGTCTCAGCATAAACATGTTGCAGGCAGATGATGAGGAGGAGCGGCGTGAGCAAGAATCCTCTCGGCAGGACAAGAGGAAGGAGAGCTGGCATCAAAGCCGCACATTACCTGATTCTCTCTGCCTGGCGTTATCAGATGCCCAGTCTGCCATCTCCACTGCTGCCCCTGGACGGGTCGCACACAGGCGCCTCCCGTCCAGACAAGCTCAAAGCATGAAGAACCGAGAGTACAGCAGTTCACTACATGCTGAAGGCAGGACGCCACAGAGCGCCGGCTCCAGCCCGATGCCAAGCCGGCACCGACCAACCTCACTCAGAGCAGGGCCCTGCATTGACATTGGTGGCCTTGACAGAAGTCCACTCGGTGATGCCAGAGAGGGCGGCATTCAGTTCAGTCTCGCAGAGAAGGCAGAAATCAACATCGAGCCAAGAGAGTTTTGCAGGAGCAGCAGTGTAAGAGTCTCCAGCTCCTCCAGCGGGAATCTCACAGATACCAGCCGATTACGCAATTCCATGGCAAGCGCTCCAGATAGGCAATCTGAGCATAAACCACGGCCCTTCATGGGGGTCATTGACAAAACTGCCCGTTTCCAACAGCAGCAGCAGCAAAGTCATCACGGCAGCCTGGTGTCCAGTTACGGGTGGCCAGAAGGACTCGTAGGCCACAATGTAGGTGTTGTAGTGAATACGCACTCGCAGGGACTGACTAGTGACCTTCAATACTCTAAATCGAGTGCTTATCAGGAGCCCATCCACAATAGCACACTTACAACTGAATTTCATTCTGGAGCGGGATATAAGGACACGAACCCTCTCCAGCAGCACTACAATGACACCAAGCACAAGCAGGCCAGCTTGGCCCGGGACAACCCCATCCTGATCAGCTCCATCAAGCCCAAACGCTCCTTTATTGAGTCCAACGTGTAGCTACCAACTCATTCTTTACCTTAAGCACAAATTATATACAATCTTACGACATAAATGTAAGGGGGCTCAGTTGAACTAAACTGAAAGGATTTGTTCCAGGTAGGTGAACATAAGATTGCCTTGCATTTCTGTTTACAGCTTCAGAGGTATTTAAGCACATTTTCAATGCGCAACGCTGCATCTGCACATTATAGGAGAGTGGAAATATGATAGAGGTGGTTTATTAATGTATTAAGATACCTGACCTGGCTTTAGACTTCAATAAGGACATAGGACATCTACCAAAATGAAACACTGTCTCTTACAGTATGATTGTGGGCCAGTCCTGTGTATTCAGAAAGCATATGCTGTTTGAATGGTGATGAGTGTGTGAGTGTATGTATGTATGTGTGTGTTTCAAGGAGAAGCGTGTTGTATTTCTTCCTAAACTACTCACTGTTTGGATTAATTTATTTATGGCTTGGTTGTCTGATTAAAACAATATTATATTTTATATATTAGTTATTTTTGCACAGCTATATATTATGAAATACCACTATGATTGTGAGGACGACATGAACTGTATAAAGGAGACCAGGTTTACATGCATGTTATGGTGAACCATATTCAGGTGTCTATAAGGACATGGATGTTATTTCATTATTTGCAATTTATTTTATGTATAGGGCTGTTATGTATTGTATTTGAATATTTCAGCATCATATACAATAAACCCCAGTTTAAGACTTAGGTTACTGTTTTATTACATTTCTCTAGTGCCTTATTTTTATCCAAAGAGATTATTACCCATTCTTAAATGTTTATTAAGTAGTTTTTTACATTAGGAAGTAAACTGTCAGGTTTTTTTAATGTGATCCATATGGTGTCCATTAAATCATTCCTTTTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073:ENSDART00000155090:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.783
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(20.3=47.1),PF134281=TPR_14=PU(31.8=41.2)
A:
NA
C2:
PF134281=TPR_14=PD(65.9=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]