GgaINT0046944 @ galGal3
Intron Retention
Gene
ENSGALG00000011009 | F1NN72_CHICK
Description
NA
Coordinates
chr7:21338907-21341636:-
Coord C1 exon
chr7:21341364-21341636
Coord A exon
chr7:21338971-21341363
Coord C2 exon
chr7:21338907-21338970
Length
2393 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TTTTAAAAAAACAACAACAGATC
3' ss Score
1.56
Exon sequences
Seq C1 exon
GCTTGAAGACTATCGTGGGAGCCCTAATTCAGTCTGTGAAGAAGCTCTCAGATGTTATGATCCTGACTGTGTTTTGTCTGAGTGTATTTGCACTAATAGGGCTGCAGCTGTTCATGGGCAACTTGAGGAATAAATGCCTGCAGTGGCCTCCAGACAATTCTACTTTTGAAACAACTGTTATTACCTACTTTAATAGCTCTATAGGTGAAAATGGTACATTTATTAATACAACAATGACAATATTTAACTGGGATGAGTACATAGAAGATGAAA
Seq A exon
GTAAGAATCCTTTATATCAACTACTTCATTGTTTGTTTTTTTTTCTGAAAAATTTTGAAATAGATACAAAAGCATATAAATATATTTTCATTTAAAATGGTGTAACCTACCCAAGAGGCATAAAAGCACTCATAGCTTTAACAGCTCAAATTCATTAAAAAAACACACCTTCTGTAGTAAATAAAGCAACCATTATGCTGTAGTTTAACATAATATTGTTCTAGATACCTATGTATATATATATATTTAACCTTCTACTGATTATAATTTTTGGAGTAAATCCTAAAGCTTTGAAGAAAAAGGCATGAATATTGAATCTGATGCTTGTATCCCTGAAAGTTAGGAAGCCTCAGTTTAACAGCTAAATGCTTTTGGATTAAAGTATCGTCAACTACCTTATAATCTTTTAATATACTTATCATCTTGGCGCATTAGTAGTATCTTAGAAATGTAGGCTTGGAAAAGATTTTGGATGATAACCCATCCTTAAAAATCTCTGAAAAAGAGCCTTTTCCTTTCCCCTGCTTTCTTTTCCTCTCCTTTCCTTTCTTCTGTTGACATAAATCCAAGTGCTTTCAGACCAGCTTGTCAGTTGTAAAGGTCATTCTAAATTTTGATCAACTTCTCTCCTAGCTTGATATCTTCAGAATACTTGATGTATTTTTTGTATTATTTCATGCCTTGAGTTGTTAATGAAACTACTTGTTATAAAACAGATCCTTTAGGGATCTTTAAAAAAAAAAGATCTTCTGAATTATTTTTGAAGTATTTTCTGTTCATTCAAGCTGAAACATATCTTCTTTATTTGCTTCAGAAGGTGTCATGTATTTGTGTCATGTATTTGTATCATGTATCATGTATCATAACATGTCTATTATCCTGTTAGTAAGTTGACAAGGGAGGAGAAAGGAATAGTTTTATGTATGCCATATATTTGATAAATTCATATCAACTATTACTTTATCATTATCTTGTTATTGAAAAAATTGATATATATATATTTTTCTAAAATACTGGGCTGACAATTGAGCTGATTTCATAGTTTGTCTGAATCCTCTGCTTAACAGAGGAGGAGCTGTGGCACATAGGAAATACATGAATTACACACACAGATAATTTTTAAAACCCATCTCAGTACCTGTCTGCATTTTTACACTCATTATGAGTGTGAGTAAATCTCTCTCAGGGAATAACTATATGAGCACCTAAATATCTACAAACCTATTGGCTCTTGTCTGATGTCAGGGAATAGATTGCAGACATAGAAGGGATGTGCACAGTCTCTCTTTAAAATAGGCAGATTTTTTTGCTGTTTCCATCATATACTGGTAGTGATAGAGTAAAAGAAGTCTATAGGAACTGGTTGCAATTCCTTGCTTGTCTCTTTAGTGTTAGCCCTGAGTTAGTTCATGCCAGCTAAGCTAATTCATGCCAGCTGGTGGTGAATCTCAGGGAACCATCTGCTTCCTGGGAACAGCCTGAGCATGCCTAATTTTGGCAACTTCAGTTTAATATGCCACCTGACCCAAAATTTCCACTAGAGATTCCCTTTTTTTTTTTTTTTTTTGGCCATATAAATCCCAAACAAGCAATTGATGAAAACTGATTTTCCCTTTTTACATCACAGCAGAGATGAGAACGGGTGGGAGAGGGTGGGAAAGGAGAACAGCAGGAGCAGGAGGAGAGAGAGAAAGAAAGGATGTTCCAGGGGCTTTTTAGTGTTTCATCTCTCTGAATTAATTTTGAACCCTGTTTTAATAGTTAGCCTATTAACAGAATATAGATTTTTCAAGTACAGTCCTCTGTAATGGAATTACATGTATTATTTTTCATGTACAATAAAAGCTTGGTTTCTCCTTCCACTGTTCAAGTCAAGATCCAGTTAACAATTTCTTGTGCATGTTGTTATGTGCTATGCTTTCATGCTGCAAAAACTTCCATGATTTTTCAAGTAATATTCAAGTATGTAATTAATAATTATAAGAAGTAACCCTAAGTGGTATATATAAAATTGTCAAATGATCAAATGATCAAAGTCAGGGTATTGACCTCATTGTTTTTCTTGCTTTCCTGGTATTTGTTTATTCATTTGCTGACATATACATTTTATTAACCTGATAGTGTATCTTATTCATTTGTATAGGTTACTGAGAATTAAACATATAACTGCCTTTCTGTTCTCTAAAGAAAGACCAACTTCAAGACTCTACAAAACATGATTTTCCTGTCAAAGCAGTACTTCCCTTCTTCATCATATATTACAATTAAACTGTTAGCTCTGCTTATTTCTTGGAAGTGTAGAAGTTTTAATCATAGCTCAACTTCCTTAGGTATAAATGATGTCATTTTCATAATCTTTTTCCATTTATTTTTTTTTAAAAAAACAACAACAG
Seq C2 exon
ATCATTTCTACTTCTTGGAAGGACAAAATGATGCTCTGCTGTGTGGCAATAGCTCAGATGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011009:ENSGALT00000017933:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.6=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(9.4=100),PF146251=Lustrin_cystein=PU(48.6=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]