Special

ENSG00000136531 @ hg19

Biotype
protein_coding
Gene Symbol
SCN2A
Description
sodium channel, voltage-gated, type II, alpha subunit [Source:HGNC Symbol;Acc:10588]
Coordinates
chr2:166095912-166248818:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
135
chr2:166184914-166185048
+
3.26
27.76
0
Exon Skipping
92
chr2:166165675-166165766
+
34.09
87.61
3
Exon Skipping
92
chr2:166165862-166165953
+
55.71
87.08
3
Intron Retention
926
chr2:166152601-166153526
+
10.48
25.63
0
Intron Retention
2925
chr2:166226810-166229734
+
9.16
29.47
0
Intron Retention
2630
chr2:166231477-166234106
+
8.69
26.44
0
Intron Retention
10712
chr2:166153646-166164357
+
8.98
20.48
0
Intron Retention
557
chr2:166165305-166165861
+
10.47
33.41
0
Intron Retention
879
chr2:166165954-166166832
+
7.72
36.92
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000075318 Scn2a 1-to-1
Mouse mm9 ENSMUSG00000075318 Scn2a1 1-to-1
Rat rn6 ENSRNOG00000005018 Scn2a 1-to-1
Cow bosTau6 ENSBTAG00000038180 SCN2A 1-to-1
Chicken galGal4 ENSGALG00000011009 SCN2A 1-to-1
Chicken galGal3 ENSGALG00000011009 F1NN72_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1