GgaINT0047343 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18632022-18638209:-
Coord C1 exon
chr7:18638059-18638209
Coord A exon
chr7:18632696-18638058
Coord C2 exon
chr7:18632022-18632695
Length
5363 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTGTTTCATTTCCCTGCCAGGCA
3' ss Score
8.61
Exon sequences
Seq C1 exon
AGCGACGTTCGAGCTCCCAAATCCACCAGGCACGTCCAAGCTATCTGCTGGAGCAAGGTGAAAGCACAGGATGAGGTCAAGGCGGTACAGCTTATGATACAGACCTCGCTCCCCAACTCAGAGGGGCATTCACGGAGCAGGTCTGTCTCAA
Seq A exon
GTAAGTTGCTACACGTGAACTGCCTACCTCTTGCTGGTGTGGGCAAAGTGTTTATGTGGAGAACAGCAAAAAGACAATGCTGCTATTCTTATCCAATGGCAGAGCACCATCTTGCAGCTTCAGCTGGCATTGTGGTCCCTATGACATCTCCATGAGCACATGCAGGAGCACCCTGGCATGTATGACTTAGCTTAAAGGCTAAAAGTTAGGTAGTGACACATTTTATATCATAGTGTGATTTAAGGAGGGGTGACCTTCTAATGCTTCTATAGAAAGTATGCTGGAAACAGTTCATGACAATTAGCTGCAAATCTGTGGTATACTGTAAATCACTTGCAGTAGCATACAAGTAGCTCAGATCCTTCTGCTCCAAAACCCCCAGTACTTCACATCTTCCAGTATTGAGCAGGACCACGAAGCTACACCAGCGCAGGGCTGACACCGTGTGACTGAGTCCACCAGCAAGGCGGGACTTGTCAGCAAGTTGTATGCGGTTGTATGGCAGTGCATCTAATCAGCTTTGGGACTGGGCTGAGAGCACAGGCGGGATACTGTCATTATCTGTGTAACTGTGCCATAGAGGAAGATGTGTTTCTCAACCAGGATTTCAGGAAGGCATCTGCCGAGAAAGGGCACAATCTCTCATGTCTCTTCCCTCCATCTGTTGGGAAATATGGTTTTCCACAGTCCTTTTGGGAACCTGGGAAGCCAGTGCTTTCAGTAGGTTTTTATGCTGACTTTTTCTCCTTGCAATCCAAACTCACCAGAAGTGCTGTGGTCAGCTCTTTCCTCCTGCTGCTGTCTACCCAGCGTGCAGACAGATTTGCACAAATGTCTCAGATATAAGCAGACCCAAAACGTGTTCCTGATGGCTGTAAAGAGGAGTGGAAATCTTCCCATTGAACTCTTCTTCCACAGCTCAGCCTGTCCATTCTGGTCTGCCCTGACTCCAGTTCTGGCTTCTCCTGGAACAGGGCTTTGGAAAAGGTTCTTTGCATCTTAACGAAGTTACTCTTTTTGTACAGGTGTTTGTTAGCCAAAGTGTTGGGTTTTTTTCTTTTTTTCTTTTTTTTTCTGATTCAGTTCACAGTAGTGCTGTAGAAATATGTAGGCTGGAACAAGATAGTAGGCAGCGGAGGGTGAATCTCCTCAATCATGTGGCACTACTGCTGCATGTGGAGCAGTGGCCTTGTGAATGGAGCACTGGTGGTTTAGACTGCAGACACATTTAAAATGGGTGCTCATGTTCCTAAGTAACCTATCAATTTGCAGAACAACTGTGTTTTGTAATGCATGTGGAAAGCAGCATGTCCTGAAAGACATGTTTTCACTGCAGATCAGCTCCGGTGATCCAGGTCTTGGGCTGATGAGCCATACAGCCATACAGCCATACCCAAGTGTGGTGTTGTATCTTCACAGGTTGGCTCTGCCGCAGTAAGCCAAGCTGCTTTCATTTTTTTGTGGCGAGCGGTGGGAGAGCTTGTCTGTCCCTCTGGCACACGGAGGAGTTGCACGAAGTCACTAATGTATTGGCTGCACCCAAGTGAATAGGCACAGTTCAGAGGAAATGGGTTACCAGCCAGCGTGAAAGCTGCGCCTCAGCTCTAGCAAATCTCCCGGCCTGTCTCCTTACCAGATCACCTACCCCAGGTTTAAAACAACACCAAATCCAAGCACAAAGGTAAGGGTAATAATACCTGTGTAAAAGGCTAAAATAACCGGCAGTGAAGGCGCTGCCCATGCAGTTTACTGCGTGGAGCATTTAATTCAGCATGCAGAACTGGTGGCTCCAGAGACCTTATGAGGGAGAAGACCCCAGCCTACGAGAGGACTGGGCCAAGGACCAGTCCCACAGGTGGTGCTGGGCGATCCCCGCTGGGCGATCCCCACTGGGCAGCTGCTCTCCAGGCTGGGCACTGGAGGGAGCTGGTCCCACAGGGTGTGTAGTTGCCACCTGAGAGCTGGTGGCACACAGGGACCCAAATTCAAGTCCTGAGCCAGCTGCTTCCAGATTTATGAGGTCTGTGTTTTACATCCAGAGTCTCTGTAGGAAGAAATGGGGAAATGGCGGAGGAGTCTGTCTAGAAAATATTTTCCAGCATGCGTATTTCTTTCGAAACAATGAATTTCAAGGAGGGTAGGAAACAGAGAAGTTGATTCCCACCTTTTTGTGAAAGGAGGTTCATCTCAGTGCAGCCAGAGCTCTCTGCTGTAGCAGCATCAAACCTGTACTTTGACAGGAAAGACAATTTCCTTTTGACATATTTGACATTAAGTTGAAGAGAGAGAAATCTCCTGGGACTCCAGCAAAGTCTGGGGGAAGGAGGAATGGAAGAGATCATCCATTATGTCCTAACAAGGAGCAATCCTAGCAAGGACAGAGCCACTACCAGCTCCCACAGAACTCCCCAGGCAGATGCAGCGTTGCCATGGGTGGGAAGGGCTTGCAGCAGAGGATCTCTCCTCTGGAGACCTTCAAAAGGTGAGAGAGGAGCTGGGGTTCTCTGCTGCAGATAAAAAAAGTCTTGTTTGTGTTTATCCTGCTGCAAGCTGCTACGGCCACGCTTTTCTGTTGGAGTGACATAACCATTTTTTAAGGAAAATCATTCAGATTTCTCTAGAGCAAAATTACATAAGCTACGTTTTGTGCCTGAAGCTGGATGGAGGCTGTGGGGTGCAGCTGGGTCTTAGTATCATGATTATGTGAAATGGACTGACTTCTGAATTAGCAGTGATAACAAATGAAGTGGCTCTGGCTGTTGTGGTGAGAAAATGGAAAGAGAGAGGGTGAGTTTGGCTGCCGCAGCAGCCACTTCCTCCACTGTGAAGGGTATGGCCAGCGCTGGCTGGGAGCAGCACAGGGTGCAGCAGTGGTGCTGGCACCGGGAGGTGCCCATGTTGTGCCTGCTCTGGAGGTCTGCAGGCTCTTTTGTTGTGGAAGCTGAGGAGGAATCTGCTGAGACTCTGGGGAAAAAAAGAGTTTGCCATCTTTGGAAGAAGGGGCAGGCAACACGGGAAGAGTACAAGGATGTTGCTAGGGTATAATTTTGATCGGGAGACCTTATCACTCTCTGCAATGACCTGAAAAGAGGTTGTAGCGGGGTGAGAGTCGGCCTCTTCTCCCAGCTAACGGTGACAGGATGAGAGGGAATGGTCTTAAGTTGTGCCAGGGGAGGTTCAGGTTTGAAACTAGGAAAAATTTCTTCTGAGAAAGAGTGGTGAGGTATCAGAACAGGCTGTCCAGGCAGGCGGTGGAGTCACCTCCTCTGGAGGTGTTTGAGAAAAGAGTAGATGTGGCACTTGGGAATGTGGTTGAGCGGGCACGGTGGTGGTGGGTTGATGGTTGGACTGGGTGATCTCAGTGGTCTTTTCCAACCACTGTGATTCTATTATTCTGCAATCCGTAGAGGTTTCTCAGAGAGAGAAAACCTAACTCACCCCGTATCTGAACCAGAATGTATTTTCCCANNNNNNNNNNAGGAGCTGCCAGCACATCACCCCGATGAGCCCCCGTCACCACTGCCCCATCACTGGATTGTCAAAAGGGCACATACTAGGGCTGCTCCGAAAGTAATGCCTCTTACTTCAGTACGTTGGCCCACAACAACAGGCAGTTGAGGTTGAACCTTCCTGCATTTGTTGTAGTTTCCATGGAAATAAATAGGAGGCATTACTTTCGGAGTGACCTCCATACATCCCCTGCCCTACACAGATGCCAGCCAGGGGGTATGTGCTGCTCATCTTCCTCTGGTTCTCACCAGCCCCTTTTCACAGCTGGGTCAGCACAAATCCTAGAAGGAAATTGTAAGAGTTCGGAAGGGTGCAATCCTCTTGCAGGGTGATGAGGACAGCGGTGTAGTTGCACTACAGGGCCCTACCCAGCAGACACTGAGGGCAGGCGGTGGCAATTCAAGATTTATCAGCTGCTTGTGGTTGATTGTCAAGATGTCCAGCAGGACTGCTCTGCTGTTTGTAAGCAATTTAATGCTGTGCCTAATTGTAATCTGCAGTGTACTGTCGGTCCACATCTGTTGTATTAAAGTGTTCATTAGCATTTAAAGGAGGAGCGGATGGTATTGATCACTCCTTTTAATATTAAACAATCATGCAGTAGTGACTGATTAGGAATCCTCTTGTATCAGAATTGCTGGTAAAAGCAAGAGCAACTGATCTTGTGGAAAAAAATAATAATCTTCTTACTCAGTGCATGCCCTAAACCATGGAGGCAAAGCTCTTCTTGTATTAAAATAGCAATAAATACATTATGGGTGGCAAACAAATTTCGAAATCCCTAAAAAACCTCATGTTGGAANNNNNNNNNNGGAGACCTTCAAAAGGTGAGAGAGGAGCTGGGGTTTTCTGCTGCAGATAACAAAGTCTTGTTTGTGTTTATCCTGCTGCAAGCTGCTAGGGCCACGCTTTTCTGTTGGAGTGACATAACCATTTTTTAAGGAAAATCATTCAGATTTCTCTAGAGCAAAATTACATAAGCTACGTTTTGTGCCTGAAACTGGATGGAGGCTGTGGGGTGCAGCTGGGTCTTAGTATCATGATTATGTGAAATGGACTGACTTCTGAATTAGCAGTGATAACAAATGAAGTGGCTCTGGCTGTTGTGGTGAGGAAATGGAAAGAGAGAGGGTGAGTTCGGCTGCCGCAGCAGCCACTTCCTCCACTGTGAAGGGTATGGCCAGTGCTGGCCGGGAGCAGCACAGGGTGCAGCAGTGGTGCTGGCACCGGGAGGTGCCCATGTTGTGCCTGCTCTGGAGGTCTGCAGGCTCTTTTGTTGTGGAAGCTGAGGAGGAATCTGCTGAGACTCTGGGGAAAAAAAGAGTTTGCCATCTTTGGAAGAAGGGGCAGGCAACATGGGAAGAGTACAAGGATGTTGCTAGGGTATAATTTTGATCGGGAGACCTTATCACTCTCTGCAATGACCTGAAAAGAGGTTGTAGCGGGGTGAGAGTCGGCCTCTTCTCCCAGCTAACGGTGACAGGATGAGAGGGAATGGTCTTAAGTTGTGCCAGGGGAGGTTCAGGTTTGAAACTAGGAAAAATTTCTTCTGAGAAAGAGTGGTGAGGTATCAGAACAGGCTGTCCAGGCAGGCGGTGGAGTCACCTCCTCTGGAGTTGTTTGAGAAAAGAGTAGATGTGGCACTTGGGAATGTGGTTGAGCGGGCACGGTGGTGGTGGGTTGATGGTTGGACTGGGTGATCTCAGTGGTCTTTTCCAACCACTATGATTCTATTATTCTGCAATCCGTAGAGGTTTCTCAGAGAGAGAAAACCTAACTCACCCCGTATCTGAACCAGAATGTATTTTCCCAGCAATTTACACAATGCTGACCTTGTTTCATTTCCCTGCCAG
Seq C2 exon
GCATTGACAGCCAGTGGATGCAGACGCTGCGCATGCACCAGATAGCCAAAGCCATTTCCCTGCAGCACGGCGACCCGCACAGCCCCACCACCGTCTCGCACTACCTGCCCTACCTGCAGAGCCAGGACTCCTATGCTGCTGCCGTGAGGCGGACGCGCGGGCCCGTCAATTACCACTACACCTCCATCAGCCACTCCAGGAACTCCTCTCCCCTCTCGCACAGTTTGGTGAGAAACCTATCGAGCCTGCACATCAACTCAAAGGGCAGCAGCACTTCCAGCACGGCGTCGGACACCGCTTCAGAAAGGGACAGGTCCACGGGCAAGGCCAGGAACGCCTCGCACAGCGGTAACTCCCGCAGCTCCTCTGATGGACGGCGCAGCGGGACGAGCTCCCCAGTGCCCCCCAGGTCCTCAGGCAGGGCCGGCAGGACTGCCTCCATGCCCCCGGCCCACGAGCAACGCAGGTATCCCCGCAACTCCCCCCAGCCCAAGGCCATCCCGGGCATGCCGCTGCAGGGGGAGAGCGAGCCCAGGAGAAGCGAAGGGGAGGGCAGGGCGAGCGAGGGGGGGTGGATAAAGGTGCAGCACGTGAAGAAGCCCCACAGGCAGAGCACCGGCAAGCAGGGTAAGGAGAGGCCCAAGGGCAGCTGGCGGGGCCGGAGGGCGTTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]