BtaINT0000273 @ bosTau6
Intron Retention
Description
Bos taurus sterile alpha motif and leucine zipper containing kinase AZK (ZAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001205493]
Coordinates
chr2:23443013-23447637:-
Coord C1 exon
chr2:23447487-23447637
Coord A exon
chr2:23443714-23447486
Coord C2 exon
chr2:23443013-23443713
Length
3773 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CATTTCCATTTCTTCCACAGACG
3' ss Score
10.06
Exon sequences
Seq C1 exon
AGCGATGTTAGAACTCCAAAAAGCACTAAACACATCCATTCGATTCAGTGGAGTAGAATGAAACCTCAGGATGAAGTGAAGGCCGTCCAGCTTGCCATTCAAACGTTATTCCCCAACTCAGAGGGCACCCCTGGGAGCAGGTCTGACTCAA
Seq A exon
GTAAGTTAGTTGTGCTCTAGACAGGTTCCAAAGTGGAAATGTCAAAAGTCTCACATCAGGAATAAGGACCAGTCTGTAAGTTTATATAGATTTTTTTTTTTTTTGCTGTGTGTACAGCTTGCAGGATCTTAGTTCCCCAACCAGGGATCGAACCTAGGTCCCCTACAGTGGAAGAGTAGAATCCTAACCACTGGGTTAGGGAATCCTTATTTACTTATTTAGCTGCGTTGGATCTTAGTTGCGGCATGCGGGATCTTTCAGTTCAGGCATTTGAACTCCTAGTTGCAGCGTGTGAGATCTAGCTTCCCGACCAGGGATCAAACCTGAGCACCCTGCACTGGGAGCAGAGTCTTAGCCACTGGACCACCAGGGAAGTTCCTCCCATAGAGATTTCTAATATCATGCATGCATGCGTGCTAAGTCGATTCAGTTGTGTCTGATTCTTTGTGACCTTATGGACTATATACAGCCCGCCAGGCTGCTCTGTCCATGCGATTCTCCAGGCAAGAGTACCAGAGTGGGTTGCCATGCCTTCCTCCAGGGGATCTCCTTGACCCAGGGGTTGAACCTGTGTCTCCTGCAGGTCCTGCATTACAGGCAGATTTTTTACCGCTGAGCCACTGGGGAAGCCCTCTAATATCATACTTCCTCCTATTTTTAGAATATTGGCTCAGTCGTGTCCGACTCTTTGCGACCCCATGGACTGTAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCCAGGCAATAGTACTGGAGTGGATTGCCATTTCCTTCTCCAGGGGATCTTCCCGACCCAGGGATCAAACCCAGGTCTCCCACATTGTAGACAGACGCTTTACCGTTTGAGCCATCAGGGAAGTCCTTATTGGCTTTATACACAGATTATATGGAAAGTAGAAATTATGGGCTTGGAAATAAGAACATATTATAATACAGTTCCATATTCAAGTAACTATCAGAGAAGATAAAAATTAATGATTATGTCCTATTGAAAAATATGTATGTATATTTATATACATATATATTTAGTTTCCAAGACTGTAGATAAAGATAAGAATTGTCTTCCATGTCCAGCACACATTCCTAGGAAGTCACTGCTGTCACTGGGGCAACCTCTTGAGTCCTTAACACCACAGATCCATCAAAGCAAAAGAATGACAGGGCAAGCAAGAGAGAGGGCCGGGGGTCAGGGGTTGATAAAAGTAAGGGAGGAAGAAAGGAAAGGAGGAGAGAGAAAGAGAAACATGAAATGCATATGCTGGGTAGTGGTGATAATAATTACAGATACTATAAAGAAGCCATTTAGACATGACTTAGAGTAAGACAGGCTGCCTTGTTGATGAACTGGTCGTTATTTGCTAGCCTCAGGGGAAAAGTTCTGACCTTCACCTTTGCAGACCCAGAAACTCTAATACAACCCAGACTCAGGCTAACAAACACTCTGGAGATGGATACATAAACCCCTGTGCAAATCACCTTTTGCCATGAGAAACATACCTTCCCAACAAACCAAAAACACATGTTTTCTGACCAATGCCTCTTTTTCCCAATAAGAAAATACCTTTGATGGAGAAGGAGATGGCAACCCACTCCAGTGTTCTTGCCTAGGAAACCCCATGAACAGAGGAGCCTGGTGGGCTATGGACCATGGGGTCGCAAAAGAGTCAGACTCGACTTAGCAATTAAACAACAATAATTAATCAGGGTTCAAGTGTGTGTCCTTCCATGATCTAACCAACACAGCAGTTTAAATCCCTCACTTGCTACATTGTAATAGAAATAAACTCTTTAAAAAAAAAAAAGAAAAGAAAATATCCCTGAGAAGTCATAACAGAAGGTTCTTCGGTGGCATGGCAACAAAGCGCCCTGATGGCTACTGTCGCCGAGTTACGAGAGCCCAACTTCTGTGTCCTCCGCCGTGCGGACCGGCTTCCCAGGCACACCAGGTGCTCTAAATGCCCACTGGCCAGGGGCCCCAGGATCCTGGGCAGTATTCTAAACCCAGCAACAAATTATTTGACAGCATGCTAGACCTGCTTTGCTCTGTCAGCATGGTTGATTGGGTTATTTTTCTTTCTCATTCTAAAGTTCTTAAACCATGGGTTTTAACTATACTAAAATTTACCATCTTCCATCACAAAAAGTCCAGAGGAAGGCCCGGCTCCAGGTACAGTAAGATAAGGCGCTCAACCATGTTAAGGATGAGAAATGAGCCTTGCCTGGTTTCTACTCTGCCATCCTTAACAGGTTGCCTTGGTCCTCAGCCTAACTCCTCTCACATTCACAGTCATTGTATAAAGATATGGTAACGCCCACAGGAAATAAGAGGTCAATCCCTTCTCTGTTCTCATGCTTGGGAGGGAGAAAGACTTGCTTAGAGACCCCTTTGCAGACTGCCTTTCAGGTCGTTTTGGCCAGAGCTGAGCACCTTGTTCATTCTTAACCATGGTATCATATGTATGGCTTGGACTAATCGAAGTCTGCCTTAGGGCTGGATGTGATCAGCTTTCCCAGTGCACATGGCTCTGTGTAGGGGGTTGGACACTGAACAAGATTGGCATTCTGTTGGAAGCTAAGATTTCGGGGAGGTCCAAGTGAAGGGAAAGAAGCATGTGATGGTTGGCTGAAGCCTGTGAGCCTGAACACAGGAGGATGCCTATGTCTGGATGCACCCCTCACCTGAGAGGCACGAGGCATTGATGCTGGCAGAGGGAGTGGGCACACTCTGTTCCTCTCCAGGAGCCTCGCTGGCACAAGCAGGGCTCAGGGAGGATGCCAGGGAACTTGGGATGTGGGCAATGCAGGCCCTAGGGAAGACAGAGAAGATCCAAGGTGGGAGGAACTTGCTTATTCATAAAGTATATAGTTTACTAAGTGGCTGTTAATTAAGCATTTTCTTTTACTGTAACTTCTTCCTGTTTGCCACAAAGCTTCATTTTTCAGGCAGAAAACTTCTTATTCCTGAACCTCAGGAATCTCTCCTCTGGAGATATAAATTGTCTTTCTTCCAATCTCTAGCTGTCTCAACCATTAGAACCCAATCTCTTTTATCTGCATTTAGTGTTCTTGAGTATTTAAAAGTTCTGGTTAGCAAAAAGCCTTTTGTTGACTAAACATGCCCCTGCCATCCAAAGACACTTAAACAGTAATTTCTAGAAGTGACAACATGGCTAAGTTGAGAAGAAGATAGAATTTAGATGCAGTATTAGCTGAGTGAACATGGGTCTGGTCACTTCACCTCTCAAGCATCAGTCTCCTCCATTATAGAATGATATTATTAGTATTGACCTGGCTCAGTGGTAAAGAATCTCCCTGCCAATGCAGGAGCCACAGGAGACGCAAGTTTGATCCCTGGATGGGGAAGATCCCTTGGAGGAGGAAATGGCAACCTTCTTCCAGTATTCTTGCCTGGAGAATCCCATGGACTGAGGAGTTTGGCAGGCCACAGTCCATGGGGTCACAAAGAGTCAGACATGATTGAGTGACTGAGCATGGTTTCTAAGAAGATGTCAGGGAAATTAAATGATATACTGTAAGAAAAGCCTTTGGAAGAGTGCCAGCATATAGCATACATTTGGTAAGTATAAATGCCCCTGTTTTTTTTAAATAAATGTTTATAATAAAGGAAATGTTCTGATACCTAGCCTAGAATTATGAATGGTAATGCTTAGAGCTTCCCTAAGAGGTTTGAAATTTTGTGAGACAGTCTTATGAATTAGGCATGCAGCTTTACTGTGGCTTCAAAGATGCCCATTTCCATTTCTTCCACAG
Seq C2 exon
ACGCTGATTGCCAGTGGCTGGATACTCTGAGGATGCGGCAGATTGCATCCAACACTTCCCTACAGCGCTCCCAGAGCAACCCCATCCTGGCGTCCCAATTCTTCCCCTATTTCAATGACCAGGACTCCTATGCAGCTGCGGTGAGGCGGACCCAGGTGCCCATTAAGTATCAACAGATTACACCTATAAACCAGTCCAGAAGCTCCTCTCCTACTCAGTACGGACTGACCAAAAACTTCTCTTCTCTGCATCTTAACTCCAGGGATAGTGGCTTTTCCAGTGTTAATACTGACAGCTCTTTAGAGAGGGGGCAATACTCTGGTAGAAGCAGGAACAAATATGATCGAGCTAGTCACTCACTGAATTCTTCTCCAAGAGGAAGACACAGTGGGAAAAGTCAGCACTCCACTCCTTCAAGAGAAAGATATTCTGGAAAATTCTACAGGGTTTCTCGGTCAGCACTCAATGCTCACCAGTCACCTGACTTCAAGAGAAGCCCGGATGCCTCCCATCAACCCAGGACCATCCCAGGGATGCCTTTGTGCACTGACATGGACTCACGAGCCAATGAGGAGGAGAGCAAAGTCAGTGAAGGGGGATGGACAAAGGTGGAGTACCGCAAGAAACCCCACAGGCCCTCCCCTGCCAAGAGCAACAGGGAAAGACCCAGAGGAAACTTCCGAGGAAGGAGAAACTTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001083:ENSBTAT00000038527:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]