HsaINT0184422 @ hg38
Intron Retention
Gene
ENSG00000091436 | MAP3K20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:HGNC Symbol;Acc:HGNC:17797]
Coordinates
chr2:173263745-173268010:+
Coord C1 exon
chr2:173263745-173263895
Coord A exon
chr2:173263896-173266049
Coord C2 exon
chr2:173266050-173268010
Length
2154 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
CATTTCCATTTCTCCCGCAGGTG
3' ss Score
12.05
Exon sequences
Seq C1 exon
AGTGATGTTAGAACTCCAAAAAGCACTAAACATGTCCATTCGATTCAGTGGAGTAGAACAAAACCTCAGGATGAAGTGAAAGCAGTCCAACTTGCCATTCAGACATTATTCACCAATTCAGATGGCAACCCTGGAAGCAGGTCCGACTCAA
Seq A exon
GTAAGTTAGTGTTCCCGTATTAGATGTGTGCTAGATTCCAGAAACTTAATTATGACATTTCCAGATGATCTAAAGACTCAGAGGATACCACCTCAATCAGTTAAGATCTATCTTTGAGCTTCGAGTAGCAGAAAACCCAGTTGCAACTGGCTTACTCCAATAATTCCCCAAGTGTGGCCCCAGGACCAGGAGCATCGGGATCACCTGTGAACTTGCTAGAAATCCAGATGCTCAGGCCCAAACCCAGACTTACTGAATCAGAACTCTGGGGATAGGAGCTGCAGTCTGCATTTTAAGGAGCCTTCCCAGTGATTAAGAACAACTCTAAAGTCCTTAAGCCACTGATTTAAACTGTAATAAAATTTATTATCTTCCATAACAAGAAGCCCAGAGGTAGGGCAGGCTCCAGGTGCAGTAAGATAAGCTGGCTCAACCATATTCAGAGAGTGGAATGAACCTTCCCTTCTTTCTGCCCTGCCATGCTCAATAGGCTGCCTTTGCCCTCGGCTCCTCTCCTGTTTACAGTCATCACACAAAGATATCACAACGCCCAGAGGAAATAACGGGTTAGGTCCCTACCTGTTCTTATATATAGGAGTAAGGAAAACTTTTCTAGAAACCCCCAACAGACTACCCGTCAGCAATTCTGCTTTGGCCAGAATGGAGCAACCTGTCCGTTCCTAAACATAGCATGAGCACATCTGACTTAAACTAATTAAAGTCGATCCCTGGAGCCAGAATGCAGTCAACTCTCCCGATCACGTGGCTACATGGAGGGGGATGGAGACTGAGCAAAATCAGGGTTCTATTGGAAGGCAAAATTCCAGAGAAGTCAAGGCGAGGAAAGAAGGCATTGTGATTCTGTATGCTACTGCTCATGTGACGTATGTAAAGTAGTCAAAGTCACAGAAACAGGAAGTAGAAGACAGTTAACAAGTGGCGGTCAGGGGGCAGGGGAGAAGGGAGGGGAAATGGAGAAAGAGGAAGGTAGAGATTAGTGGGTATAGAGTTTCAGTGTTGCAAGATGAAACAGTTACAGAGATCCGCGCAACAATGTGAATATACTAACACTACTGAACTAGAGGCTTAAAAATGGCTAAGATGGAAAATGTGGTTTTTACCACAATAAAATACACACATACACACAACAACAACAACAGAAGAAGGCATTGTGATGGACTGAAGCCTGGGAGGAGTCTCTGGAATTGTCTGGACAAGTCACTCACTTCAGAGCTCGGGGTCACCTGTGCCCAGGCAGTGAGGAGACAGAGACATGTGCATGCTCTGATACTCTCCACGCGCACTATCTGCGTGAGCAGGGGGTGGAGTAGCTGAGGAAGCTGAGGCTGGGAGGACCACCCAGGAACTCTAGAACATGGGTAACGTTGTTCAGGCTCGGGGGAAAACAGAAAAGATCTCAGGTGTGAGGAACTTGCTTATTCACTGAAATATAGCTTACTAAATGGTTCTTGTTAATTCACCATTTTCTTTTATCTTAACTTCTTCCTATCTGCCAATGCAGCTTCATTTTTTTATGCTGAAAATACTTCTTATTCCCGAGCCTCAGGATCTCTCCTGTGGACACGTGAACGGTCTTTCTTCCAAACAATCTCTAGCTGTCTCAACCTTCGGAACCTCATTTCTCTTATCTGCATTTAGGGTCCTTGAGGTTTTAAAAATGCAGGTGGCAAAACAAACCTTTTGTTTACTAAACATGCCCCTGCCACCTGAACATACTTTCTAGAAGTAACAACACAACTATGTAGGAAGAAGATGGGATTTAGATGCAGAAGGACTTGGTATTATTGACTGAGTGATCTTGGGCAAGTCATTTGACCTCTCAAGCTTCCTCATTTATAGAATAAAACTATTAGTGTTTACCTAAGAAGATTACTGAGAGGATTAAATGAGATAGTGTAAGTAAAGCCCATGGAACAATGCCAAGCACATAGCATATATTGAATAAGTGTAAATGTCCTTATTTTTTAAAGTATTTGTAATAAAAGAAACGTCCTTATACATAGCCTAGAATTTCTATGAATGGTAAAGCTTAGAGCATCCCAAACAGCCCTGAATTATCCTAAGACAGGCGTATGAATTAGACATGCAGCTTTAGTGTGGCTTAAAAGATGCTCATTTCCATTTCTCCCGCAG
Seq C2 exon
GTGCTGATTGCCAGTGGTTAGATACTCTGAGGATGCGGCAGATTGCATCCAACACTTCTTTACAGCGTTCCCAGAGCAATCCTATTCTGGGGTCACCGTTCTTCTCACACTTTGATGGCCAGGATTCCTACGCTGCTGCTGTGAGACGGCCCCAGGTGCCCATTAAGTATCAACAGATTACACCTGTGAACCAGTCCAGAAGCTCGTCTCCTACTCAGTATGGACTGACCAAAAACTTCTCTTCCCTACATCTCAACTCTAGGGACAGTGGCTTTTCCAGTGGCAATACTGACACCTCTTCAGAGAGGGGTCGATACTCAGACAGAAGCAGGAACAAATATGGACGTGGTAGTATATCACTCAATTCTTCTCCTAGAGGAAGATACAGTGGAAAGAGTCAGCATTCCACTCCTTCAAGAGGAAGATACCCTGGAAAGTTCTACAGGGTTTCTCAGTCAGCACTCAATCCTCACCAGTCGCCTGACTTCAAGAGAAGCCCCAGGGACCTCCACCAACCCAACACCATACCAGGGATGCCTTTGCACCCTGAGACTGACTCAAGAGCCAGTGAAGAGGACAGCAAAGTCAGCGAAGGGGGCTGGACAAAAGTGGAATACCGGAAAAAGCCCCACAGGCCATCTCCCGCCAAAACCAATAAAGAGAGAGCCAGAGGGGACCACCGTGGATGGAGAAACTTTTGATGAATTGAACTACATAGCTTTTCTAAGCAGGTTAAAAAAAAAAAAAAAAAGAAATGTAATGGTTTTTGATAATATGATCCCTTCAGATTGAATTAACGAAAAGACAACACTTCCAGTTTTTGGATTGGGAAATACCTTCTAATTGAGACTATAGCCAAACCAGGGCCAAAATTATGGATATTGGTCACCCAGTGATCATAACTAGGCTTGAAAATCACTACACATATTTTCTGCCTTGAGTGAACATTTTTAGAGGAAAGGTTATGCCATCTTTTTACCCTAACCACTGATATTCTGGTTAGCAGGGCCAGGACAAGGGGAAGGAAAATGAGGTCAACAAAAAAATCAAATTTTTAGGAAAAGATAAGATGAATGTTACTGATTTTTCCTTTTGGCTGAGGCTGCAATATGGCCTGGCAAGGCACTGTTACTGATCTTGTCTTTAACATTTTGATATTTTGTTCATCATAATTTTTGCATTTATTTTTTTAAATATTGCATTAAAATATCATTTAGCTTGATTATCGAGTTTTTTGGTTTGAGGTTTTTTGTTGCTTCTTTTTTCTTTTCTTTCTTTCCCCCTCTTTTTTTTGGATGTCCCCTTAAATTTTGTGCCCAAGGCAGGTACCTCACTCATCTCATCCTTGGCTCAGCCCTGCTGGTTAGTATTTAGTATTTATTTTAGTAAGATATTTGTGTCTGTATGATGGTCAGAGTTGAACTGATCTGGCTTGTCATTTTTCAGTAATAAAAAAAGTTACTGAATTTAATGTTGAATATGATGCATATCTCATTCATTACGATTTATCAGAAACCAAAGATTTAAATTGCCTAGATTTGTGGTTCTTTCTCTTCCTAAGTTCCCAGCGACTGCTTTCAAATACTATTTTCTAAATTTCACCAAAGGAGCAAAGAGGATAAAACAACACTCCATAAAGGCCTCTTGGGATGTCAGAAATCTAAAATCTAAAAGAAAACAGACACAGAGCAAGACAATAACATCACAAGCTAAAAGCCAGAGAAATTTAAAATTACCAACATCCTTGTTGGAGTAAGACAGTAAATATCAGCCTTGCAGCAAGACAGCTCTGAGCAGCTGTGGGCAAAGAGGTAAACCAGTGGGGGTGCAAGGAGACTGTCTGCAGCTTAGGGCAGAAATGGTGGGATCCAACTTGTGAAATGCTTCATGTTTTACAAACCAAAAAGTCAGGTAGCAACAAACTTATTGTATGTCAAATCAATAAATGTTACTTTCAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091436:ENST00000375213:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.431 A=NA C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains