GgaINT0047343 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSQ0]
Coordinates
chr7:16842857-16849345:-
Coord C1 exon
chr7:16849195-16849345
Coord A exon
chr7:16845686-16849194
Coord C2 exon
chr7:16842857-16845685
Length
3509 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTGTTTCATTTCCCTGCCAGGCA
3' ss Score
8.61
Exon sequences
Seq C1 exon
AGCGACGTTCGAGCTCCCAAATCCACCAGGCACGTCCAAGCTATCTGCTGGAGCAAGGTGAAAGCACAGGATGAGGTCAAGGCGGTACAGCTTATGATACAGACCTCGCTCCCCAACTCAGAGGGGCATTCACGGAGCAGGTCTGTCTCAA
Seq A exon
GTAAGTTGCTACACGTGAACTGCCTACCTCTTGCTGGTGTGGGCAAAGTGTTTATGTGGAGAACAGCAAAAAGACAATGCTGCTATTCTTATCCAATGGCAGAGCACCATCTTGCAGCTTCAGCTGGCATTGTGGTCCCTATGACATCTCCATGAGCACATGCAGGAGCACCCTGGCATGTATGACTTAGCTTAAAGGCTAAAAGTTAGGTAGTGACACATTTTATATCATAGTGTGATTTAAGGAGGGGTGACCTTCTAATGCTTCTATAGAAAGTATGCTGGAAACAGTTCATGACAATTAGCTGCAAATCTGTGGTATACTGTAAATCACTTGCAGTAGCATACAAGTAGCTCAGATCCTTCTGCTCCAAAACCCCCAGTACTTCACATCTTCCAGTATTGAGCAGGACCACGAAGCTGCACCAGTGCAGGGCTGACACCGTGTGACTGAGTCCACCAGCAAGGCGGGACTTGTCAGCAAGTTGTATGCGGTTGTATGGCAGTGCATCTAATCAGCTTTGGGACTGGGCTGAGAGCACAGGCGGGATACTGTCATTATCTGTGTAACTGTGCCATAGAGGAAGATGTGTTTCTCAACCAGGATTTCAGGAAGGCATCTGCCGAGAAAGGGCACAATCTCTCATGTCTCTTCCCTCCATCTGTTGGGAAATATGGTTTTCCACAGTCCTTTTGGGAACCTGGGAAGCCAGTGCTTTCAGTAGGTTTTTATGCTGACTTTTTCTCCTTGCAATCCAAACTCACCAGAAGTGCTGTGGTCAGCTCTTTCCTCCTGCTGCTGTCTACCCAGCGTGCAGACAGATTTGCACAAATGTCTCAGATATAAGCAGACCCAAAACGTGTTCCTGATGGCTGTAAAGAGGAGTGGAAATCTTCCCATTGAACTCTTCTTCCACAGCTCAGCCTGTCCATTCTGGTCTGCCCTGACTCCAGTTCTGGCTTCTCCTGGAACAGGGCTTTGGAAAAGGTTCTTTGCATCTTAACGAAGTTACTCTTTTTGTACAGGTGTTTGTTAGCCAAAGTGTTGGGTTTTTTTCTTTTTTTCTTTTTTTTTCTGATTCAGTTCACAGTAGTGCTGTAGAAATATGTAGGCTGGAACAAGATAGTAGGCAGCGGAGGGTGAATCTCCTCAATCATGTGGCACTACTGCTGCATGTGGAGCAGTGGCCTTGTGAATGGAGCACTGGTGGTTTAGACTGCAGACACATTTAAAATGGGTGCTCATGTTCCTAAGTAACCTATCAATTTGCAGAACAACTGTGTTTTGTAATGCATGTGGAAAGCAGCATGTCCTGAAAGACATGTTTTCACTGCAGATCAGCTCCGGTGATCCAGGTCTTGGGCTGATGAGCCATACAGCCATACAGCCATACCCAAGTGTGGTGTTGTATCTTCACAGGTTGGCTCTGCCGCAGTAAGCCAAGCTGCTTTCATTTTTTTGTGGCGAGCGGTGGGAGAGCTTGTCTGTCCCTCTGGCACACGGAGGAGTTGCACGAAGTCACTAATGTATTGGCTGCACCCAAGTGAATAGGCACAGTTCAGAGGAAATGGGTTACCAGCCAGCGTGAAAGCTGCGCCTCAGCTCTAGCAAATCTCCCGGCCTGTCTCCTTACCAGATCACCTACCCCAGGTTTAAAACAACACCAAATCCAAGCACAAAGGTAAGGGTAATAATACCTGTGTAAAAGGCTAAAATAACCGGCAGTGAAGGCGCTGCCCATGCAGTTTACTGCGTGGAGCATTTAATTCAGCATGCAGAACTGGTGGCTCCAGAGACCTTATGAGGGAGAAGACCCCAGCCTACGAGAGGACTGGGCCAAGGACCAGTCCCACAGGTGGTGCTGGGCGATCCCCGCTGGGCGATCCCCACTGGGCAGCTGCTCTCCAGGCTGGGCACTGGAGGGAGCTGGTCCCACAGGGTGTGTAGTTGCCACCTGAGAGCTGGTGGCACACAGGGACCCAAATTCAAGTCCTGAGCCAGCTGCTTCCAGATTTATGAGGTCTGTGTTTTACATCCAGAGTCTCTGTAGGAAGAAATGGGGAAATGGCGGAGGAGTCTGTCTAGAAAATATTTTCCAGCATGCGTATTTCTTTCGAAACAATGAATTTCAAGGAGGGTAGGAAACAGAGAAGTTGATTCCCACCTTTTTGTGAAAGGAGGTTCATCTCAGTGCAGCCGGAGCTCTCTGCTGTAGCAGCATCAAACCTGTACTTTGACAGGAAAGACAATTTCCTTTTGACATATTTGACATTAAGTTGAAGAGAGAGAAATCTCCTGGGACTCCAGCAAAGTCTGGGGGAAGGAGGAATGGAAGAGATCATCCATTATGTCCTAACAAGGAGCAATCCTAGCAAGGACAGAGCCACTACCAGCTCCCACAGAACTCCCCAGGCAGATGCAGCGTTGCCATGGGTGGGAAGGGCTTGCAGCAGAGGATCTCTCCTCTGGAGACCTTCAAAAGGTGAGAGAGGAGCTGGGGTTCTCTGCTGCAGATAAAAAAAGTCTTGTTTGTGTTTATCCTGCTGCAAGCTGCTACGGCCACGCTTTTCTGTTGGAGTGACATAACCATTTTTTAAGGAAAATCATTCAGATTTCTCTAGAGCAAAATTACATAAGCTACGTTTTGTGCCTGAAGCTGGATGGAGGCTGTGGGGTGCAGCTGGGTCTTAGTATCATGATTATGTGAAATGGACTGACTTCTGAATTAGCAGTGATAACAAATGAAGTGGCTCTGGCTGTTGTGGTGAGAAAATGGAAAGAGAGAGGGTGAGTTTGGCTGCCGCAGCAGCCACTTCCTCCACTGTGAAGGGTATGGCCAGCGCTGGCCGGGAGCAGCACAGGGTGCAGCAGTGGTGCTGGCACCGGGAGGTGCCCATGTTGTGCCTGCTCTGGAGGTCTGCAGGCTCTTTTGTTGTGGAAGCTGAGGAGGAATCTGCTGAGACTCTGGGGAAAAAAAGAGTTTGCCATCTTTGGAAGAAGGGGCAGGCAACACGGGAAGAGTACAAGGATGTTGCTAGGGTATAATTTTGATCGGGAGACCTTATCACTCTCTGCAATGACCTGAAAAGAGGTTGTAGCGGGGTGAGAGTCGGCCTCTTCTCCCAGCTAACGGTGACAGGATGAGAGGGAATGGTCTTAAGTTGTGCCAGGGGAGGTTCAGGTTTGAAACTAGGAAAAATTTCTTCTGAGAAAGAGTGGTGAGGTATCAGAACAGGCTGTCCAGGCAGGCGGTGGAGTCACCTCCTCTGGAGGTGTTTGAGAAAAGAGTAGATGTGGCACTTGGGAATGTGGTTGAGCGGGCACGGTGGTGGTGGGTTGATGGTTGGACTGGGTGATCTCAGTGGTCTTTTCCAACCACTGTGATTCTATTATTCTGCAATCCGTAGAGGTTTCTCAGAGAGAGAAAACCTAACTCACCCCGTATCTGAACCAGAATGTATTTTCCCAGCAATTTACACAATGCTGACCTTGTTTCATTTCCCTGCCAG
Seq C2 exon
GCATTGACAGCCAGTGGATGCAGACGCTGCGCATGCACCAGATAGCCAAAGCCATTTCCCTGCAGCACGGCGACCCGCACAGCCCCACCACCGTCTCGCACTACCTGCCCTACCTGCAGAGCCAGGACTCCTATGCTGCTGCCGTGAGGCGGACGCGCGGGCCCGTCAATTACCACTACACCTCCATCAGCCACTCCAGGAACTCCTCTCCCCTCTCGCACAGTTTGGTGAGAAACCTATCGAGCCTGCACATCAACTCAAAGGGCAGCAGCACTTCCAGCACGGCGTCGGACACCGCTTCAGAAAGGGACAGGTCCACGGGCAAGGCCAGGAACGCCTCGCACAGCGGTAACTCCCGCAGCTCCTCTGATGGACGGCGCAGCGGGACGAGCTCCCCAGTGCCCCCCAGGTCCTCAGGCAGGGCCGGCAGGACTGCCTCCATGCCCCCGGCCCACGAGCAACGCAGGTATCCCCGCAACTCCCCCCAGCCCAAGGCCATCCCGGGCATGCCGCTGCAGGGGGAGAGCGAGCCCAGGAGAAGCGAAGGGGAGGGCAGGGCGAGCGAGGGGGGGTGGATAAAGGTGCAGCACGTGAAGAAGCCCCACAGGCAGAGCACCGGCAAGCAGGGTAAGGAGAGGCCCAAGGGCAGCTGGCGGGGCCGGAGGGCGTTCTAACGGAGAGAACAGCTGTGGGCTGCGATGGAGCCAGCTTCCCTCTTATTCCACTGAATATTCAACTGGGAGATGACACGTGCTTCTGCTCGACGTGCTCCAGCTGTCGGCACACCGCACTGAAGCCATGACACTACCTCGCTGGGCTGGCTGCACAGCTCTGCATGCAGCCGGCCGGTGGGCGCCTGGAAGGAGCCTGCGCTCGGCAACGTGACCTCTTCCCTCCCAGTACTGATGGATTTAATATGGTTGCCTCCCCTCCCTTTGGCTGCTCGTGTTCTTAGCTGACTGGATGTGCACTAATTTGCTTAATATTTCAAAAATAAATTCAGTAATACACAGCCGTGTGCTGTAACAAAGACCTCTCCGTTTCATCTACAGAGGAGTTGTGCTGCTAACTCTCCCATCACCTCTGGCTCCGAGCACTGTTTCTGCACGCTTTATTCACTCTGCTTTCTGCCAAGGCCATGGGAAAAGGTAATATTTTGGTCAGACCACCACAATCACAGAAAGCAGAAGCACAAACAGATTTTTCTTTAGGCCCACTCTGGTAGCTTCCCTTCTCCACTTCCAGCCATCCGTCCCCTGTCAGGAATCGCTCACCTCTCTCTTCGTTAAAACCCAGACACCGGGTATCTGACACTGCAGAGCAGACGCTGCGACACGTACAGATGTCGTAATCAGAGGGATAAAAAAAAAATAGGCTTTATGCTTTTAGAAAAAAAAAGGAAAAGAGAGGGAGGGAGAACAAGGCATTGCCTTTATAATGGATAGATCCATCCCCTCTGAGGTCTGTGATAATGTTTATCCCCGGGCAGCAGGCATTTTTTAATTGAATTTTTAAATGTGGCCAGGCTGTGCTGCCTTTGTCTTTCAGTCTTCAGGCAGTAAAGACAAGGTCAGCAAAGTTTGTGATTAATGTGGTCTATAGCTCCACTGAGAACAAAAGCACAGCCGTAGACTCACTTGTCTTCAGAAAGTTCCTTGTTGGCCTTTTCACTCCAAGTTGATTTCACACAATTAAACAGGGAAAAAAAGTTAGGGTTTCCCAAGATGCAAGAGGGAAAAAAAGGATGAAACACATAAAGGAAGCTGAACCCAAAGCAACACATGGTACCCTTTGAAAGCCAAGAAACTGTAAATTAGAGATACCTTTGAGGTGCTAGATACCATCAGTGCCAGGCGATGCTCACTGGCATGCAACTGTGAGCAATGCTGGAGGAGCTGCCAGCACATCACCCCTGATGAGCCCCCGTCACCACTGCCCCATCACTGGATTGTCAAAAGGGCACATACTAGGGCTGCTCCAAAAGTAATGCCTCATACTTCAGTACGTTGGCCCACAACAACAGGCAGTTGAGGTTGAACCTTCCTGCATCTGTTGTAGTTTCCATGGAAATAAATAGGAGGCATTACTTTCGGAGTGACCTCCATACATCCCCTGCCCTACACAGATGCCAGCCAGGGGGTATGTGCTGCTCATCTTCCTCTGGTTCTCACCAGCCCCTTTTCACAGCTGGGTCAGCACAAATCCTAGAAGGAAATTGTAAGAGTTCGGAAGGGTGCAATCCTCTTGCAGGGTGATGAGGACAGCGGTGTAGTTGCACTACAGGGCCCTACCCAGCAGACACTGAGGGCAGGCGGTGGCAATTCAAGATTTATCAGCTGCTTGTGGTTGATTGTCAAGATGTCCAGCAGGACTGCTCTGCTGTTTGTAAGCAATTTAATGCTGTGCCTAATTGTAATCTGCAGTGTACTGTCGGTCCACATCTGTTGTATTAAAGTGTTCATTAGCATTTAAAGGAGGAGCGGATGGTATTGATCACTCCTTTTAATATTAAACAATCATGCAGTAGTGACTGATTAGGAATCCTCTTGTATCAGAATTGCTGGTAAAAGCAAGAGCAACTGATCTTGTGGAAAAAAATAATAATCTTCTTACTCAGTGCATGCCCTAAACCATGGCACCAAAGCTCTTCTTGTATTAAAATAGCAATAAATACATTATACAGTGGCAAACAAATTTCGAAATCCCTAAAAAACCTCATGTTGGAATATATTTACATACAGTTCCTGCTTCAAGTGTGGAAACGATCTTTAATTTTAATTGTAAAAAATACACTTCATATCTTCTTCTGTGTACAGTCTTCCCCTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344:ENSGALT00000015215:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]