BtaEX0000079 @ bosTau6
Exon Skipping
Description
Bos taurus sterile alpha motif and leucine zipper containing kinase AZK (ZAK), mRNA. [Source:RefSeq mRNA;Acc:NM_001205493]
Coordinates
chr2:23443013-23450464:-
Coord C1 exon
chr2:23450390-23450464
Coord A exon
chr2:23447487-23447637
Coord C2 exon
chr2:23443013-23443713
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATTTTTTTTTTATTCCACAGAGC
3' ss Score
11.15
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCCCCATTTGTAATGGAGAAGTGGATTGTAGGCATCGTGGAAAATCAGACTGTAGAATGCACTGTCACATATGAG
Seq A exon
AGCGATGTTAGAACTCCAAAAAGCACTAAACACATCCATTCGATTCAGTGGAGTAGAATGAAACCTCAGGATGAAGTGAAGGCCGTCCAGCTTGCCATTCAAACGTTATTCCCCAACTCAGAGGGCACCCCTGGGAGCAGGTCTGACTCAA
Seq C2 exon
ACGCTGATTGCCAGTGGCTGGATACTCTGAGGATGCGGCAGATTGCATCCAACACTTCCCTACAGCGCTCCCAGAGCAACCCCATCCTGGCGTCCCAATTCTTCCCCTATTTCAATGACCAGGACTCCTATGCAGCTGCGGTGAGGCGGACCCAGGTGCCCATTAAGTATCAACAGATTACACCTATAAACCAGTCCAGAAGCTCCTCTCCTACTCAGTACGGACTGACCAAAAACTTCTCTTCTCTGCATCTTAACTCCAGGGATAGTGGCTTTTCCAGTGTTAATACTGACAGCTCTTTAGAGAGGGGGCAATACTCTGGTAGAAGCAGGAACAAATATGATCGAGCTAGTCACTCACTGAATTCTTCTCCAAGAGGAAGACACAGTGGGAAAAGTCAGCACTCCACTCCTTCAAGAGAAAGATATTCTGGAAAATTCTACAGGGTTTCTCGGTCAGCACTCAATGCTCACCAGTCACCTGACTTCAAGAGAAGCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001083-'28-28,'28-26,29-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.294 C2=0.798
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCATCGTGGAAAATCAGACT
R:
GAGAGGAGCTTCTGGACTGGT
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development