GgaEX6042279 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr7:18632022-18639352:-
Coord C1 exon
chr7:18639278-18639352
Coord A exon
chr7:18638059-18638209
Coord C2 exon
chr7:18632022-18632695
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTCCTTCCTGAGCAGAGC
3' ss Score
6.15
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCACCGTTTGTCATGGAGAAGTGGATCGTGGGGATCGAAGAACACCAGTCTGTAGAATGTATTGTTACCTATGAG
Seq A exon
AGCGACGTTCGAGCTCCCAAATCCACCAGGCACGTCCAAGCTATCTGCTGGAGCAAGGTGAAAGCACAGGATGAGGTCAAGGCGGTACAGCTTATGATACAGACCTCGCTCCCCAACTCAGAGGGGCATTCACGGAGCAGGTCTGTCTCAA
Seq C2 exon
GCATTGACAGCCAGTGGATGCAGACGCTGCGCATGCACCAGATAGCCAAAGCCATTTCCCTGCAGCACGGCGACCCGCACAGCCCCACCACCGTCTCGCACTACCTGCCCTACCTGCAGAGCCAGGACTCCTATGCTGCTGCCGTGAGGCGGACGCGCGGGCCCGTCAATTACCACTACACCTCCATCAGCCACTCCAGGAACTCCTCTCCCCTCTCGCACAGTTTGGTGAGAAACCTATCGAGCCTGCACATCAACTCAAAGGGCAGCAGCACTTCCAGCACGGCGTCGGACACCGCTTCAGAAAGGGACAGGTCCACGGGCAAGGCCAGGAACGCCTCGCACAGCGGTAACTCCCGCAGCTCCTCTGATGGACGGCGCAGCGGGACGAGCTCCCCAGTGCCCCCCAGGTCCTCAGGCAGGGCCGGCAGGACTGCCTCCATGCCCCCGGCCCACGAGCAACGCAGGTATCCCCGCAACTCCCCCCAGCCCAAGGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344-'24-26,'24-24,27-26=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.127 C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGTGGATCGTGGGGAT
R:
GGAGTGGCTGATGGAGGTGTA
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]