DreEX6034766 @ danRer10
Exon Skipping
Gene
ENSDARG00000006978 | zak
Description
sterile alpha motif and leucine zipper containing kinase AZK [Source:ZFIN;Acc:ZDB-GENE-070912-386]
Coordinates
chr9:2890883-2893895:-
Coord C1 exon
chr9:2893821-2893895
Coord A exon
chr9:2893391-2893541
Coord C2 exon
chr9:2890883-2891553
Length
151 bp
Sequences
Splice sites
3' ss Seq
CGGTGCTGTGTTTGTCGCAGGGT
3' ss Score
9.24
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CCTCCTTTCGTGATGGATAAATGGATAGTGGGAATATCTGGCACACATACTGTTGACTACATAGTGAACTATGAG
Seq A exon
GGTAACGTGAAATCTCCGAAGTGTACAAGACACGTTCACACAGTGCAGTGGAGTGCAGACAGCGGAAAAGACGTGATCAAACCTGTGGAGCTGGTCATCGAGACGGCGCCGGGCATCAGGGAGGCGCACAACAGGAGCAGGTCCAACTCAG
Seq C2 exon
GTGTGGATCCCAAATGGATTTACAGTCTGAGAATGAAGCAGATGAAAGAGCAGGCGGCCCAGGAGTCCCCCAGCAAAATGAGCCTCCCTCAGTTCCTGTCCGTCATCAGCAACCAGTCTTCATATGCGGCAGCTGTAAGAAGATCTCCAAACCGCAGTCCTCTCAGTCCCTGGACCGACTCCCGCAGCTCCTCTCCAACTCTCTCCGTCAAACTCTCCAACATGCACCTGGGCTCCAAAGGCAGCAGTCCGTCCAGCACCACCTCCGAGAGCGCATCCGAACGCGAGCGGCCCCCGAGCGCTGGAGCCAAACACAACTACAACAAAAAACCCTACTACGATCACCACACACTGAAGATGAGCAGTAGAGGAGATGGAGAACCCAGGAGGTTTCTGCCGCAGAGAGGATCTAGAGGCTTCCAACATGCTGGACGACCACGAAACGCACACTCATACGCAACGCCACCGCACTACCAAAGGCCCATACCGGGGATGTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006978-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.275 C2=0.897
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAATATCTGGCACACA
R:
AGAGAGTTGGAGAGGAGCTGC
Band lengths:
253-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]