MmuEX6102157 @ mm9
Exon Skipping
Gene
ENSMUSG00000004085 | B230120H23Rik
Description
RIKEN cDNA B230120H23 gene [Source:MGI Symbol;Acc:MGI:2443258]
Coordinates
chr2:72273288-72280667:+
Coord C1 exon
chr2:72273288-72273362
Coord A exon
chr2:72276259-72276409
Coord C2 exon
chr2:72279289-72280667
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTTGATTTTTTTTTTAACAGAAT
3' ss Score
8.97
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
CCACCATTTGTAATGGAGAAGTGGATCGTGGGAATAGCGGAGGATCAGACTGTGGAGTGCACGGTCACCTATGAG
Seq A exon
AATGATGTCAGAACACCAAAACTCACTAAGCACGTGCACTCCATACAGTGGGACAGAACGAAGCCTCAGGATGAGGTGAAGGCGGTCCAGCTTGCCATTCAGACTCTGTTCTCCAGCTCAGAGGGCAACCCTGGCAGCAGATCCGACTCCA
Seq C2 exon
GTGCGGACTGCCAATGGTTAGACACTCTGCGCATGCGGCAGATTGCATCCCACACTTCTCTACAGCGTTCCCAAAGCAACCCTATCTTGGGGTCTCCTTTCTTCCCTTACTTTGCCAACCAGGATTCCTATGCTGCTGCGGTGAGGAGGACCCAGACTCCGGTGAAGTACCAGCAGATTACACCAAGCATCAACCCTTCCCGGAGCTCCTCCCCCACGCAGTATGGGCTGTCCAGAAACTTCTCCTCCCTGAACCTCAGCTCCAGGGACAGCGGCTTCTCCAGCCTCAATGACAGCTCCTCCGAGAGGGGCCGCTACTCAGACCGAAGCAGAAACAAGTACTACCGTGGTAGTGTGTCCCTCAATTCTTCCCCGAAAGGAAGATATGGTGGGAAAAGTCAGCATTCCACACCTTCAAGAGAAAGATATTCTGGAAAGTTCTACAGGCTGCCCCAGTCAGCGCTGAACACTCATCAGTCCCCTGACTTCAAGAGGAGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004085-'26-24,'26-23,27-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.255 C2=0.826
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGGGAATAGCGGAGGAT
R:
GGAAGGGTTGATGCTTGGTGT
Band lengths:
251-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: