HsaEX0001098 @ hg38
Exon Skipping
Gene
ENSG00000091436 | MAP3K20
Description
mitogen-activated protein kinase kinase kinase 20 [Source:HGNC Symbol;Acc:HGNC:17797]
Coordinates
chr2:173261063-173266783:+
Coord C1 exon
chr2:173261063-173261137
Coord A exon
chr2:173263745-173263895
Coord C2 exon
chr2:173266050-173266783
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCGTTTGTTTGTTTTACCAGAGT
3' ss Score
7.34
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCACCATTTGTAATGGAGAAGTGGATTGTAGGAATAGCAAAAAGTCAGACTGTGGAGTGCACTGTCACATATGAG
Seq A exon
AGTGATGTTAGAACTCCAAAAAGCACTAAACATGTCCATTCGATTCAGTGGAGTAGAACAAAACCTCAGGATGAAGTGAAAGCAGTCCAACTTGCCATTCAGACATTATTCACCAATTCAGATGGCAACCCTGGAAGCAGGTCCGACTCAA
Seq C2 exon
GTGCTGATTGCCAGTGGTTAGATACTCTGAGGATGCGGCAGATTGCATCCAACACTTCTTTACAGCGTTCCCAGAGCAATCCTATTCTGGGGTCACCGTTCTTCTCACACTTTGATGGCCAGGATTCCTACGCTGCTGCTGTGAGACGGCCCCAGGTGCCCATTAAGTATCAACAGATTACACCTGTGAACCAGTCCAGAAGCTCGTCTCCTACTCAGTATGGACTGACCAAAAACTTCTCTTCCCTACATCTCAACTCTAGGGACAGTGGCTTTTCCAGTGGCAATACTGACACCTCTTCAGAGAGGGGTCGATACTCAGACAGAAGCAGGAACAAATATGGACGTGGTAGTATATCACTCAATTCTTCTCCTAGAGGAAGATACAGTGGAAAGAGTCAGCATTCCACTCCTTCAAGAGGAAGATACCCTGGAAAGTTCTACAGGGTTTCTCAGTCAGCACTCAATCCTCACCAGTCGCCTGACTTCAAGAGAAGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091436-'47-48,'47-46,49-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.431 C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGACTGTGGAGTGCACT
R:
AGACGAGCTTCTGGACTGGTT
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development