GgaEX6042279 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BSQ0]
Coordinates
chr7:16842857-16850489:-
Coord C1 exon
chr7:16850415-16850489
Coord A exon
chr7:16849195-16849345
Coord C2 exon
chr7:16842857-16845685
Length
151 bp
Sequences
Splice sites
3' ss Seq
GTTGTGTCCTTCCTGAGCAGAGC
3' ss Score
6.15
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CCACCGTTTGTCATGGAGAAGTGGATCGTGGGGATCGAAGAACACCAGTCTGTAGAATGTATTGTTACCTATGAG
Seq A exon
AGCGACGTTCGAGCTCCCAAATCCACCAGGCACGTCCAAGCTATCTGCTGGAGCAAGGTGAAAGCACAGGATGAGGTCAAGGCGGTACAGCTTATGATACAGACCTCGCTCCCCAACTCAGAGGGGCATTCACGGAGCAGGTCTGTCTCAA
Seq C2 exon
GCATTGACAGCCAGTGGATGCAGACGCTGCGCATGCACCAGATAGCCAAAGCCATTTCCCTGCAGCACGGCGACCCGCACAGCCCCACCACCGTCTCGCACTACCTGCCCTACCTGCAGAGCCAGGACTCCTATGCTGCTGCCGTGAGGCGGACGCGCGGGCCCGTCAATTACCACTACACCTCCATCAGCCACTCCAGGAACTCCTCTCCCCTCTCGCACAGTTTGGTGAGAAACCTATCGAGCCTGCACATCAACTCAAAGGGCAGCAGCACTTCCAGCACGGCGTCGGACACCGCTTCAGAAAGGGACAGGTCCACGGGCAAGGCCAGGAACGCCTCGCACAGCGGTAACTCCCGCAGCTCCTCTGATGGACGGCGCAGCGGGACGAGCTCCCCAGTGCCCCCCAGGTCCTCAGGCAGGGCCGGCAGGACTGCCTCCATGCCCCCGGCCCACGAGCAACGCAGGTATCCCCGCAACTCCCCCCAGCCCAAGGCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009344-'35-45,'35-43,38-45=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.255 C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSGALT00000015215fB1575
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGTGGATCGTGGGGAT
R:
GGAGTGGCTGATGGAGGTGTA
Band lengths:
258-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]