GgaINT0047494 @ galGal3
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
NA
Coordinates
chr7:24089350-24089733:-
Coord C1 exon
chr7:24089588-24089733
Coord A exon
chr7:24089495-24089587
Coord C2 exon
chr7:24089350-24089494
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGA
5' ss Score
8.65
3' ss Seq
AACCATGTCTCCCCCACCAGGCT
3' ss Score
7.6
Exon sequences
Seq C1 exon
GGCTGCAGCGGGGATGAGCGTGAGATGGGCAAGATGGTGGCCGACCTCATCTCCAAGACGGAGAAGCCGGTGGTCGCTGAAGGGCAGGAGCCGCCCGAGTTCTGGGTAGCTCTGGGCGGCAAGACCAGCTACCCCAACAGCAAGAG
Seq A exon
GTACGAGCTCCGTGTCCCCAGCCCGTCGCTGGGCTCTCTTAGTGCCCCCAGTCCCTTGGCCAGTTCCTACCACAACCATGTCTCCCCCACCAG
Seq C2 exon
GCTCCAGGAAGAGAATCCCTCTGTGCCCCCCCGGCTCTTTGAATGCTCTAACAAGACAGGCAGGTTCTTGGCCACTGAGATCGTCGACTTCACCCAGGATGACCTGGACGAGAACGATGTTTACCTGCTGGACACTTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.245 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.3=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCAGCTACCCCAACAG
R:
TCCCAAGTGTCCAGCAGGTAA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]