MmuINT0172922 @ mm10
Intron Retention
Gene
ENSMUSG00000026175 | Vil1
Description
villin 1 [Source:MGI Symbol;Acc:MGI:98930]
Coordinates
chr1:74427240-74427623:+
Coord C1 exon
chr1:74427240-74427385
Coord A exon
chr1:74427386-74427478
Coord C2 exon
chr1:74427479-74427623
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTA
5' ss Score
6.36
3' ss Seq
CTTGTGTTCCCATCCTACAGGCT
3' ss Score
9.77
Exon sequences
Seq C1 exon
GGCTGCAGTGGGGATGAGAGGGAGATGGCCAAGATGGTTGCTGATACCATCTCTCGGACGGAGAAACAAGTGGTAGTAGAGGGGCAGGAGCCAGCCAACTTCTGGATGGCTCTGGGCGGGAAGGCGCCCTACGCCAACACCAAGAG
Seq A exon
GTACTATCCCAGCATCTCCTCCCCTGCCTCCCACCCATGTTCCGTGTGAGAGACCTTCTGAGAGTCTTCAGTGCTTGTGTTCCCATCCTACAG
Seq C2 exon
GCTGCAGGAGGAAAACCAAGTCATCACTCCTCGGCTCTTCGAGTGCTCCAACCAGACCGGACGCTTTCTGGCCACAGAGATCTTTGACTTCAATCAGGATGACCTGGAGGAGGAGGATGTGTTCCTATTGGATGTCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026175:ENSMUST00000027366:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(33.3=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCCAAGATGGTTGCTG
R:
GTCTGGTTGGAGCACTCGAAG
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types