DreINT0036225 @ danRer10
Intron Retention
Gene
ENSDARG00000059342 | avil
Description
advillin [Source:ZFIN;Acc:ZDB-GENE-060421-6683]
Coordinates
chr11:211235-211779:-
Coord C1 exon
chr11:211637-211779
Coord A exon
chr11:211380-211636
Coord C2 exon
chr11:211235-211379
Length
257 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
3' ss Seq
ACCTGCGCTCTGCTCTTCAGTTT
3' ss Score
8.27
Exon sequences
Seq C1 exon
GGCTCCAGCGGGGACGAGCGTGCGATGGCGAAGGATCTGAGTGTGATCATGGGTCGCTCAGAGCAGGTGATGGCGGAGGGTCAGGAGCCGGAGGAGTTCTGGCAGAGTCTGGGTGGACGAACGCCATACGCCAGCGACCGACG
Seq A exon
GTAAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACCTAAATCAACAGTAAATACGACACACTGTCCCTCTCCCCAACAGGGAAATCAGCAACACTCAGTAATGCATGATTATCTGCTGTCAATGTAAATGTCTTTATAATGGAGCACAAACAGCCGCTACAGAGCCAGAGCGGGGTCAATCTGAGTAACACACACCTGCGCTCTGCTCTTCAG
Seq C2 exon
TTTGCAGCAGGTGACTCTGGAGCACCAGCCGCGTCTCTTCGAGTGCTCCAATAAGACGGGACGCTTCACAGCCACTGAGGTCACGCAGTTCACACAGGACGACCTGCGGGAGGACGACGTCATGCTGCTGGACACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059342:ENSDART00000104546:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(47.8=68.8)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGATGGCGAAGGATCTG
R:
TGGTCCCAGGTGTCCAGC
Band lengths:
268-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]