BtaINT0024426 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55996016-55996413:+
Coord C1 exon
chr5:55996016-55996161
Coord A exon
chr5:55996162-55996268
Coord C2 exon
chr5:55996269-55996413
Length
107 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CTACATGGACTGTATTGCAGACT
3' ss Score
5.07
Exon sequences
Seq C1 exon
GGGTCTAGTGGGGATGAGCGGGCGATGGCTAAGGAGCTGGCCGGACTTCTCTGTGACGGTACTGAGAACACAGTGGCTGAGGGCCAGGAGCCAGCTGAGTTCTGGGACCTGCTGGGAGGGAAAACTCCCTATGCCAGTGACAAAAG
Seq A exon
GTACAGGACCACAGCATCCCCTCCGTTTGGCTCCCCCTGCCTCCCAGACTGGTGAACTGCAGGTGATTTCCAAGCAGCTCAGCTCCTCTACATGGACTGTATTGCAG
Seq C2 exon
ACTACAGCAGGAGATCCTAGATGTCCAGTCTCGTCTCTTTGAATGTTCCAATAAGACTGGCCGGTTCACTGTCACTGAGATCATAGACTTTACCCAGGACGACCTGAACCCAGGTGACGTGATGCTCCTGGATACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGACTTCTCTGTGACGGTA
R:
CTGGTCCCAGGTATCCAGGAG
Band lengths:
251-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]