MmuINT0022336 @ mm10
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:127013508-127014243:+
Coord C1 exon
chr10:127013508-127013653
Coord A exon
chr10:127013654-127014098
Coord C2 exon
chr10:127014099-127014243
Length
445 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTGCATGACTCTACGGCAGGCT
3' ss Score
2.97
Exon sequences
Seq C1 exon
GGGTCTAGTGGGGACGAGCGGGCGATGGCTAAGGAGCTGGTCGACCTTCTCTGTGATGGCAATGCGGACACTGTGGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAACAGCCTACGCTAATGACAAAAG
Seq A exon
GTAAGTGAGCGGTCAGCTCTGTCTTCTTGGCTGGTCTGGCCAGTGGTCCCTACAAATCCTGAGATTCCCTCACAGCTTTAAACATTCCAGGCTGGGGACACAGGTTAGTCAACAAAGTCCTTGTGCAAACACAAAGACCTGAGCTCCATCCCTCGCAGACTGAAAGCAGCTACAGCAGCGCAGGCCTGTAATCCCTGTGCGGGGGAGTGGGGGTGACAACAGGATCCTTCAGACTTGCTGGTGGCCTAGTCTAACCAAATGGACACAATCCAGGTCCTGGGAGACGCTGTCTCAAACACTACAGAGCTATGGGAGAAGACACCCAAAGCTATTTCTGTTCTCATATGGACACACATGCATACGTGCACACACACTCTCATGAGCACACACACACACACAACATGATTCCTATGCATCACTCTCCTTCTGCATGACTCTACGGCAG
Seq C2 exon
GCTGCAGCAAGAAACCCTGGACGTCCAGGTCCGGCTCTTTGAGTGTTCCAATAAGACTGGCCGCTTCCTTGTTACGGAGGTCACGGACTTCACCCAGGAGGACCTGAGCCCAGGTGATGTGATGCTTCTGGACACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432:ENSMUST00000026500:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCTAGTGGGGACGAGC
R:
TCCCAGGTGTCCAGAAGCATC
Band lengths:
287-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types