GgaINT1029663 @ galGal4
Intron Retention
Gene
ENSGALG00000011433 | VIL1
Description
villin-1 [Source:RefSeq peptide;Acc:NP_990773]
Coordinates
chr7:22033790-22034173:-
Coord C1 exon
chr7:22034028-22034173
Coord A exon
chr7:22033935-22034027
Coord C2 exon
chr7:22033790-22033934
Length
93 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGA
5' ss Score
8.65
3' ss Seq
AACCATGTCTCCCCCACCAGGCT
3' ss Score
7.6
Exon sequences
Seq C1 exon
GGCTGCAGCGGGGATGAGCGTGAGATGGGCAAGATGGTGGCCGACATCATCTCCAAGACGGAGAAGCCGGTGGTCGCTGAAGGGCAGGAGCCGCCCGAGTTCTGGGTAGCTCTGGGCGGCAAGACCAGCTACGCCAACAGCAAGAG
Seq A exon
GTACGAGCTCCGTGTCCCCAGCCCGTCGCTGGGCTCTCTTAGTGCCCCCAGTCCCTTGGCCAGTTCCTACCACAACCATGTCTCCCCCACCAG
Seq C2 exon
GCTCCAGGAAGAGAATCCCTCTGTGCCCCCCCGGCTCTTTGAATGCTCTAACAAGACAGGCAGGTTCTTGGCCACTGAGATCGTCGACTTCACCCAGGATGACCTGGACGAGAACGATGTTTACCTGCTGGACACTTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011433:ENSGALT00000038192:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(49.3=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGACCAGCTACGCCAACAG
R:
TCCCAAGTGTCCAGCAGGTAA
Band lengths:
168-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]