RnoINT0162858 @ rn6
Intron Retention
Gene
ENSRNOG00000015408 | Vil1
Description
villin 1 [Source:RGD Symbol;Acc:1307048]
Coordinates
chr9:81706702-81707113:+
Coord C1 exon
chr9:81706702-81706847
Coord A exon
chr9:81706848-81706968
Coord C2 exon
chr9:81706969-81707113
Length
121 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
TCCTCCTGCCAATCCTACAGGCT
3' ss Score
7.44
Exon sequences
Seq C1 exon
GGCTGCAGTGGGGATGAGCGGGAGATGGCCAAGATGGTTGCTGATACCATCTCTCGGACAGAGAAACAAGTGGTGGTCGAGGGGCAGGAGCCAGCCAACTTCTGGATGGCTCTGGGTGGGAAGGCGCCATATGCCAACACCAAGAG
Seq A exon
GTACCGTCCCAGCGTCTCCTTCCCTGCCCCCTGCCCCCGCCCCATGTGAGAGACCTTCTGAGTCTTTAGTGCTTGTGTTTCTCACGTTTCTGCCCCACACCTCCTCCTGCCAATCCTACAG
Seq C2 exon
GCTGCAGGAGGAAAACCAAGTCATCACTCCTCGGCTCTTTGAGTGCTCCAACCAGACTGGGCGCTTTCTGGCCACAGAGATCTTTGACTTCACTCAGGACGACCTGGAAGAGGATGATGTGTTCCTATTGGATGTCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015408:ENSRNOT00000021432:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.041
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(33.3=53.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGATGGCCAAGATGGTTG
R:
CATCCTCTTCCAGGTCGTCCT
Band lengths:
243-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]