HsaINT0180185 @ hg38
Intron Retention
Gene
ENSG00000127831 | VIL1
Description
villin 1 [Source:HGNC Symbol;Acc:HGNC:12690]
Coordinates
chr2:218435289-218436626:+
Coord C1 exon
chr2:218435289-218435434
Coord A exon
chr2:218435435-218436481
Coord C2 exon
chr2:218436482-218436626
Length
1047 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACT
5' ss Score
8.77
3' ss Seq
ATCTTCTCTCCATCCTGCAGACT
3' ss Score
10.39
Exon sequences
Seq C1 exon
GGTTGTAGCGGGGACGAGCGGGAGATGGCCAAGATGGTTGCTGACACCATCTCCCGGACGGAGAAGCAAGTGGTGGTGGAAGGGCAGGAGCCAGCCAACTTCTGGATGGCCCTGGGTGGGAAGGCCCCCTATGCCAACACCAAGAG
Seq A exon
GTAACTCTCAGGTCCCTCCGCCTCCAGGTTACCAAGGTGGGGGAGCCGCCCAGCATCTCCATCCCTACACCCAGAGCCTACAGCAGGCATGGACTGAGGACTCTGTGTGTCAGGCACTGTGCCAGACCCCCAGGGCTACAAGATGAATAAAGGGCAGCCCATACCCTTGGAGCCTCTTGGCACAGGGGCTGTGTCTGTGCTGCTCACTACAGTATGCCCAGGACCTGGTGGGGTATTTCCTTGGCAAAGGGAATTCCTGGCCATAGGAGGCAGCTCAAAGCAAGGGGCAGGGCTAGAGGTTTGCCTTTCAGTAACAAGATGCCAGAGGCCAGCCTGCTTTTAGGTCCTGACACAGGCCTGGGATGCTGAGGAGCCCCAGCCACAAGCCCTCTTTCAAATGGTTTTGTTTTGTTTTTGTGACAGAGTCTCGCTCTGTCAACTAGGCTGGAATGCAGTGGTGCAATCTCAGCTCACTGCAGCCTCTGCCTCCGCCTCCCAGGTTCCAGCAATTCTCCTGCTGCAGCCTCCTGCGTAGCTGAGATTACAGGCGCCCACCACCGTGCCCGGCTAATTTTTGTATTTTTAGTAAAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAATGCTAGGATTACAGGTGTGGGCCACGGTGACTGGCTCAAATGGTTTTTCTAGAGAATATCCATGATCTACTAGTCCCTAGTTCAAAAGCAAAAGGGCATGTACTGTAGTAGCAGTAGGAGGGATGGAGGGAAGATATCAGGAAGAACTTCCTAACAAGGCTCTGCAAAAGACACTGGAATGCATGTCCAGAAAGCAGTGACAATTTCTTCCTCAGAGCACTCTTGGAATGAGAGGGGACCCTTTTATCAATCAGAAGATAGAGCATTTTGCTGGAGATGACCTTTCTATGCCAGAGTCCCTTCCTCAGAGTTCTGTGTCCTCAATTCTCCTTTTGCCACACCTTCCTTCTGCCAGTACAATCTTCTCTCCATCCTGCAG
Seq C2 exon
ACTACAGGAAGAAAACCTGGTCATCACCCCCCGGCTCTTTGAGTGTTCCAACAAGACTGGGCGCTTCCTGGCCACAGAGATCCCTGACTTCAATCAGGATGACTTGGAAGAGGATGATGTGTTCCTACTAGATGTCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127831:ENST00000248444:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGAGCGGGAGATGG
R:
TGGTCCCAGACATCTAGTAGGA
Band lengths:
280-1327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains