RnoINT0024207 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70304001-70304711:+
Coord C1 exon
chr7:70304001-70304146
Coord A exon
chr7:70304147-70304566
Coord C2 exon
chr7:70304567-70304711
Length
420 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTACTTGACTGTTCTGCAGGCT
3' ss Score
6.36
Exon sequences
Seq C1 exon
GGGTCAAGTGGGGACGAACGGGCGATGGCTAAGGAGCTGGCAGAGCTTCTCTGTGATGGTGACGCAGACACTGTAGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAGCCCCCTACGCTAACGACAAAAG
Seq A exon
GTGAGCAGTCAGTTCTGTCTTCTTGGCTCCCCTGGCTGGTGGCCCATACAAATCCTGAGATCCCTCAAAGCTTTAAACATTCCGGGCTTGGGACACAGCTTAGTCAACAAAGTCCTTGTGCAAACACAAGGACCTGGGCTCCATCCCTAACAGACAGAAACCAACTACTGCAGCCCAGATCTGTGACTCCTGTGCTGGGGACCGGGGGACAACATGATCGCTCAGACATGCTGGTCGGCCAGTCTAGCCAAACTGACAATCCAGGCCCTAGGAGACCCTGTCTCAAAAATACTACAGTGCAGAGCTATGGAAGACGACACCCAAAGCTATTTCTGTCCTCATATGGACACACACACACACACACACACACACACACACGATTCGTATGCAGCTCTGTCCTTCTACTTGACTGTTCTGCAG
Seq C2 exon
GCTGCAGCAGGAAACCCTGGACATCCAGGTCCGGCTTTTTGAATGTTCTAATAAGACCGGCCGGTTCCTTGTTACTGAGGTCACGGACTTCACCCAGGATGACCTGAGCCCAGGTGATGTGATGCTCCTGGACACCTGGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PD(48.6=69.4)
A:
NA
C2:
PF0062617=Gelsolin=PU(34.2=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGTGGGGACGAACGG
R:
GGTCCCAGGTGTCCAGGAG
Band lengths:
287-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]