GgaINT0047659 @ galGal3
Intron Retention
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21075813-21079808:+
Coord C1 exon
chr7:21075813-21075933
Coord A exon
chr7:21075934-21079720
Coord C2 exon
chr7:21079721-21079808
Length
3787 bp
Sequences
Splice sites
5' ss Seq
CATATCCTT
5' ss Score
-20.06
3' ss Seq
TCCTTAACTATAATTTACATTAT
3' ss Score
-3.77
Exon sequences
Seq C1 exon
ACTTTTATAGTATTGAATAAAGGGAAGGCAATCTTCCGATTCAGTGCCACCTCCGCCCTGTACATTTTAACTCCATTCAATCCTCTTAGAAAAATAGCTATTAAAATTTTGGTACATTCAT
Seq A exon
ATCCTTTTTAATTTTGGTTCAAGAAAAAAAACTCATATCTCTACTTCATTGCAAATAGCAGTTTTTCATATGTTATTTTTTTTTTTTTCCAGCATGCGAGTTATGGTAAGTTTCTATAAATACAAGGAAATTTGAATACACTATTTAAATACACTTGAATATATAATTGAAATGCACTATAGCTATCCTGTCAAATTTTGATACTTTAGCTGGAGAAATTTGCAGATGGATTTGAGAAATCACTGATCTCTGGATTTGTAAATCTTTTTCATTTTTTAAAAACAGTCTTGTTAATTTAAAGACAATTGAAACCTGCAGGAATATTTCAGAAAAGTTTCTCCAAATTAACGTTAATATTGTTACATGTTCCTGATTCTTTTTTTGTGCTATGCAGCCTATCCATAATAAAAGTTATATTTAGTAAAGAAAGCACTTTGTACTCATAAATTCCAGAAAAGCTCTCAATTTTAAAATTTTGCAATCTAATTAATGGCAAGCATCATAAGCCACTGCCAGAAAGCAGCAGCAGCAGCCCTGCAGACAGTTCGCAATGTCTTTGTATGTGCAAATGGTGGACAGATTAGGGGATCAGAGCTGATGATAGAAGCTGATGACCGTGCATGATGGAAGGTTTTAGTCTGGTATGTAGATTGGTGTCTGATGTTCGTAACAGTTGATGGACATTTCTAGAGTATGAGGCTTTTGTGCAACTTCTTGCACAACCCCAAGATTGGGAAAAGCAGTCACCACATGGAAACTTTAGCATAACAGTAAAAATAGAGCAGTTACTCAAAGGCAGAAGTCTTATTTCTAGAGATTGCTGGGGCAATTTTCTAAATATTTGGATAAGAAGAATAAAATGGAGTGGCTGCTGATGACTCAGGAGATCTTTTCCTCTAAGCTCCCTCAAAGTTAAAGTAGTGAGAGAAGGAAAGGAAAGTGCCTGGAAAGGAGTTAGGGAGCAGCTGGGAGCAGTAAGGGAACTGACAGACCTGCAGGCATCATGGTGATGATGGTGAGAAAATGTAGCCAGTACTGTCAGATTGAAGCTATTTTTATCTTAAATACAGAAGTGGGATTTTTGGTTTGTTTGCTTTATCTTAAATGGAAGGATAGGTTTGTGGGGTTTTTTTGTTTTTGTTTGTTTGTTTTTAATTCAGTACAATGCAAACACTGCAAGTATTAATGTGTTCAGTCACCTAGAATATTCCATAATGCATTTTAGGTTTTGGATACTTATATTTTGTCAAGGTTAGCTTATAAGAAAAAAAAAATAGGCAGTAATGTTGTTTACTCTTTTTACTGATCTAATGACTTTTACCAATAAACTCTACTGCCCTGCTTTGAGGCAGCAGTTTGGCATTGTAGTCTCTGTAAAAGAACAGTGCCTTTTGCTTTCAGTGCAAAAGATGAGTTTTGAGCACAGTGAAACTGATGCATCTTGGAGGACCTCCGCATACGTGTCCTCTGAATTCCCTGAACCTCTGTGTATGGGGCTCCAGTCACATGTGCCCAAACACACAATCAGATGTTGTTCACTGAGCAAGGAGTCAGTGTGTCTCTTCTAGAGCTCAGAGACTTCTGCTTTGTTCTTTCTTCACTGTTAGTACCTACTATAATAGCAGCCCCAAGAATTGGTAACACTATAAATTTCTCTGCTGACTCACCCCCTGGTATTCTGACTGCTTGACTCAAGTCAAGATAGAGTGTTCGTCTGAGAGGGCAACGCAAAAGTGATGGAGGATGGCCAGACTTTTGCAGTGAATGGAAAAGAATGGAGAGTGAGCAGACAAAAATGCAGGCGACAATGGCTAGCGTTGCATGGTGCAAGGAGTATTAGAAAGGATCAAGGAGATGCATGAGAGAAAAAGTGGTACCTTGCAAAGTATCTCTATGCTAGCTAGCCTTTGGAAACTGAAATTAGTGTTATTCAGCATTACCTCACTACCAGGAGCTATCTGCAAAACCAATTAGCAGTGTGTTTTTTGTCTAATTTCCATCTTTCACAAAGTCCATGCAGGCAATAGGATGCTTCATCTGTTCCAGAAAGTGACTGGCTTGATGTTGTGCTGTGTCTCTAAATAAAATCCTTTTTGGTACAGGAAGAGTGTGAAAAAGAAGTCACTATATATCAGAATTGTTCACATATGTGTATAGTTAAATTATGTACAGAGTGAGCAATGTGCAAGGACCTACCTGTGGTCTTTGTTATTAATGATACAGAGCTGTAAACCCATAATGTACCACAGAACTAAAAAAACTCAGCTCTCCCAAAAAGGCATTTAACTTCTTTAACTGAAGCTACAATCATCTCCCAGCTTTATTCCTAAAATTCATAAGGATTCAGGATTTAGATTTTTGTAGATGCTTCATTTCCTACATAGCTGAAGGATCTAGAATAAAGAAGGGAGAGATCCTTCTGGCAAATTCAATCTGATGCACAGTGCTGATTTGCTTAGAGAAGGCAGTCTATCATGTCTATGAAAGGAGTTTTATAGGCCTTCAATCTGATTCCTCACTTCTGAACACTGGCCATTTTCATTTAACATTCTTTCAAAGTAGTTTTGTATGTGATATACATGGTGATAGAGCTCTTTGCCTAGCCCTATAAAAGACATGACAGCCTTTATGTTTCAGCATCAAACGTGTATTTAGCAGCAAGAATATTATCTGAGTGGATAGTGTTTATCCTACTGGCATTGATCAGATTTCTGCCATTTTTAAGAATATCCCCCAAATACTAGATATTTCTAGATATATCTAGAATATTACTATTCTAGATTAGCCTAATACTAACTGAATAATATAGATATTATTCAGAGTAATTATAACTGAGTAATATAGATATTACTAGAATATTACTAGATATATCTAGAAATACTAGAGTGCTATATCTCTAATCACATTTTATGTACTTTGTTTTATGAGACAATTGAAACTTCCAGGAGATATCCTTGTTTCTCAAATACCAAAATTAATTATCTTTGGACAAGGAAATTTCTGATTTAAATAAATTCAGAATCTTGAATCTTGCCTGTAGACTGTACAGAGAAGCACCTTATAGGATAATAGTTAATTATTCTAAGCAAATAGCAGTGGTTTTTGCTATTCAGAGCGTGTATGACAACGTAATCCCCAAAATGAGTTGTCACTTTAATGAAAGATGTTGCTATATTTACTGCTTATTCAACAATTTAGATAAATGTCACCTATGGGACCTTTCCTGTGATTGGAATGTTAACTTCGAAGTATATGCTCAAGTCTGAATGGTTCAGCAGCTTTAAGTAACGATCTGAATGCTAGCACAAATTTTCTGCAAAATTTAGGTTGAAATGTAACTTCTCCTCTTCCTCTTTCATTTATAGTGAAGGTGGTTTTTTTTTTGTTTGTTTGGTTTTTTTTGCATAAAAATATAACTCAAACCAAAAAATGCTGTCTACATTTTTTTTTTAAATGAAATTAAAATTCCTGAGCTCTTACATGCAACTTCATTTGTAAACTGCTTTCTTTAGTTTGAACTATCTTCTGTACCAACACTTTTCATGCAAAATATTTTTAAGGAACCGAACATATAAAAAGGTGACTAGAGGAAAAATTAAAGTCAAGTTAAACGTTTGGCATAAAGGTGTATGTAGTATTGCTTATTTTCTGCTGCCATCGTGTGGCTACTTTGGGTCAAGTTTTAGCCTGCACAATAAAAACGGCAATACATTGCTGTACTTAAAATGTACAGTTGATGTGATATTGCTTGAACTGCTATTGTGATTTCCTTAACTATAATTTACAT
Seq C2 exon
TATTCAGCATGCTTATTATGTGCACTATTTTGACCAACTGTGTGTTTATGACCATGAGTAACCCTCCGGACTGGACCAAGAATGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943:ENSGALT00000017814:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(0.7=6.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]