GgaINT0048258 @ galGal3
Intron Retention
Gene
ENSGALG00000010956 | TTC21B
Description
NA
Coordinates
chr7:21159789-21161594:+
Coord C1 exon
chr7:21159789-21159909
Coord A exon
chr7:21159910-21161526
Coord C2 exon
chr7:21161527-21161594
Length
1617 bp
Sequences
Splice sites
5' ss Seq
TAGGCATGT
5' ss Score
0.01
3' ss Seq
CCCCCTCTTTTTACTTGCAGGTT
3' ss Score
12.64
Exon sequences
Seq C1 exon
TCCTGTTGCAAGGCTTATGAATACATGGGATACATAATGGAAAAGGAACAAGCGTATAAAGATGCAGCAATAAATTATGAGATGGCCTGGAGATATGGAAACCAATCAAATCCAACAATAG
Seq A exon
GCATGTTTATATAATGTATATATACAACGCACTACAGTAGGAATGCATAATTTTACCCTTTCCTGGAGAGACTATATTTCTCTTTCCATAGTGAGAATATTACTGGTTTTTCTTCACATTAGAGCCACAGCTGTCTAAGGATCTACTTAAGTCATTTGGAAAGCTCTCATGGCAGAAGATAGCTGTTCCAACTTAATTAAGAAATTTCAGCTTACCATTTTTAGTGCAAGGTTAGATCTACAGCTCTTTTAGTTTGCTCGTACATGCGGTCTTGAAGTATGGTGTTCACTGTCAATAATATTTGTATAGTAATGCAGCATCTACTGGCTGTAGTAGAGGACCTTTTATACCTCTTCTGTATCTGGTGGTGGCAGATCACTGAATTCTTAATTATTATGTTTTGATCATCAGACAAATTCAGAGATTTTTAATTGTTTAAAGAGCTATAAATATTTGCATTAAAATTAATGGCTAGCTGAGAACTTGAGATAGTATTCAATTTCCAGTTTGGATGACTAATTGAAGCCTAGGCTGGACTGTTCCATTTGTAGACTATTTGAAGTAGGAAACCCTGTTTAAAATTTAGGTTAAAAAGTCCTTTCTCACTCGACAGTTAGTCTTGTCTCTACATCCTGAGGCTGGTGATTTACATAAATTTTATTCCCAGTTTTGAACTGTCTTATGGCCCCCCAGAAATGCATGCTGCTTGTAATCTGTAGTCCCTTTCTTCCCCAGCATTAGGGAGAGATGGCCTTTGATGTCATCTGGAAAATCAGTACTGTTTTATGTGGTTTTGGTGGGTTTTTTATTTTTTTTTTTTATTTTCTAGATAATTCTGTAGCTTTATGGTTATGAACTGCCATGTTTTGTTTCTCTAACTGTAACACTTGGAGGCTGCAATGATTTGGTTCATGATTCTGTGTGATCTGTGGGTTAGTGTTTTATTGATCATAGAGTCATAGAATGGTTTGGGGTGGGAAGGACATTAAAGACCATCCAGTTACAGTCCCCCTGCCATGGGCAGAGGTGCCTCAATATACCTAGGGATAGGGCTTCTCTGTCCAGGCTGATGTATTTGAGCTATACTTTTTACCTTTGAAAATATCAGTCTTAATATGTTGCTACAGGGCCTAACTATTCCACATGACAGATTTTTATTAGTGGTCTGGTGACTGTGGAACAGAAAAGCATTTTAATTCCTTGGTTTGTTTCTGCATTTGTGACTTTTCTTTTGTCCTTTAATAATGTAATCATTTATTTTCTTTATAGACAATGTATTGTAGATCAGAAACTCTGACGGTTAGAAACTCTGTAGGGTGCCACATTCATTGAAAGAGGACAGCCATTACATGTTCCCTGGAGGAAAAACTTGCTCTCCAGAATGTCTCCCTTTGATTCCAATGTAGCTAACAGTCAGTGTGTAAAGGACATTCATGTACTACTTAAAGTGACTTTCAATAGAAATTTTTACAGGCTTAGATAAGGGAAAACCGGAAAACAAATATATTAGCCATAGAAACATACAGTTACCAAAATGAACTTAAATGTGATATTTTACTTATTTGATACAGATATTGAAACTGTCACCTTTTTTCTTCCCCCTCTTTTTACTTGCAG
Seq C2 exon
GTTACAAGCTGGCTTTCAATTACCTGAAAGGAAAGAGATATGTTGATGCAATTGCTATTTGTCATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010956:ENSGALT00000017831:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(0.1=0.0),PF134141=TPR_11=PU(56.7=92.7)
A:
NA
C2:
PF134141=TPR_11=FE(32.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTTGCAAGGCTTATGAA
R:
TGACAAATAGCAATTGCATCAACA
Band lengths:
185-1802
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]