RnoINT0157595 @ rn6
Intron Retention
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52288109-52289341:-
Coord C1 exon
chr3:52289221-52289341
Coord A exon
chr3:52288177-52289220
Coord C2 exon
chr3:52288109-52288176
Length
1044 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATTTTTTTTTGTCTTAACAGGAT
3' ss Score
11.53
Exon sequences
Seq C1 exon
TCCTGCTGCAAAGCTTATGAATATATGGGGTACATTATGGAGAAGGAGCAAGCATACACAGATGCAGCCTTCAACTATGAGATGGCCTGGAAACATAGCAACCAGACAAATCCTGCTGTGG
Seq A exon
GTGAGTTCGGCAGGCTGGGCCCAGTGTCTTCACAAGAACTGGTATATCACTTGAAAATACTTGTGCTTCTTTAGGATCTGTTAAGTTGCTCAACTGGACAAAGTACAGGAACTAATGATTATTTATAAGTTTTCCTTTATATATTCATATTATATATCATGAGATAGTCATCTCGTAAAATTGAAATTTCTTAAATACCCATAAAAATAAATAAATTTTGATAATTTATTCCTTCCGAGTAATATGTTTCAAAGTTATTTATATATTCTGTTCCTTAGAAAGCTTCAGAAAACACAGATTCCAACTCATCAGCTTTTTCCCTCTGTTATTATAGGTTATAAGTGATCTTGGCAGCTCTCCCAGAGTTCCTTTCATAGGTGTTCCTCTGACATTTTCAATTATTTAGTTTGCTCCTAAAAATTGTCACTATATCCACTACTCCAGTCTGGCTGGCCAGATTAACATTACACTTTCACTTGTCAAGAAGCCCTCAAACTCCACATACTGTTTCCATAGAATTCTGAATGTATACATACTTACATAGACACACACACACACACACACACACACACACACACATGTATGTATGTATTCCATGTATCAATATGCACAAGAACACATTTAAAATGAAAAATCATTTTAAAATAGAAACCACTAGGAGCCAAGACAAGTGCCTGTGAAGGGAGAACTCCTCTGACCTATACTCAGGGTACATGGCAGCCACGAGGTGCGTGGATTCACTTCCACTGCCTGGTGATGAGATTTGACTGTACCCTGAAATCAGTGAGACCTTTGACCCTTTTAGTAAGCTAAAGAACCCACACCTGTGGAGTACCAATGTCCCCACCCAGCAGCTACCCACTGGGCTCCTTTCTGCTCCTTTCTGTTTGCTGGTCTTGATTTCACTTTGCTCCCTCTTGCCGTGTCCCTTTGCTCTGTATTAGTTTGGCCAATAGTCCTCCTTAGGACTTCTCTAATGAGTCAACCAAAGAGGAACAAAAACCACATAACCACTGTGTCCATTATTTTTTTTTGTCTTAACAG
Seq C2 exon
GATATAAATTGGCATTTAATTACTTAAAAGCAAAACGATATGTGGATGCAATTGACGTATGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868:ENSRNOT00000007832:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(0.1=0.0),PF145591=TPR_19=PU(43.8=68.3)
A:
NA
C2:
PF145591=TPR_19=FE(34.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGCAAAGCTTATGAA
R:
ACATACGTCAATTGCATCCACA
Band lengths:
183-1227
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]