DreINT0169093 @ danRer10
Intron Retention
Gene
ENSDARG00000012368 | ttc21b
Description
tetratricopeptide repeat domain 21B [Source:ZFIN;Acc:ZDB-GENE-031010-34]
Coordinates
chr9:50113465-50113742:-
Coord C1 exon
chr9:50113622-50113742
Coord A exon
chr9:50113533-50113621
Coord C2 exon
chr9:50113465-50113532
Length
89 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
GCGTCATCTTTGTTTACCAGGCT
3' ss Score
6.82
Exon sequences
Seq C1 exon
TCCTGCTGTAAGGCGTATGAGTACATGGGCTACATTATGGAGAAAGAGCAGTCTTTCAGAGATGCTGCTATGAATTATGAAATGGCCTGGAAGTACAGCAATCAAACCAACCCTACGATCG
Seq A exon
GTGAGATTACAGCTGCTCTTGAACCATCCTCATGTGTGTTTACAATCACATCACTCACTAACACTCACTGCGTCATCTTTGTTTACCAG
Seq C2 exon
GCTACAAGCTTGCCTTCAACTACCTGAAGGCCAAAAGACACGTGGATGCTATAGATGTGTGCCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012368:ENSDART00000044270:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(49.3=80.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTGTAAGGCGTATGAGT
R:
CATCCACGTGTCTTTTGGCCT
Band lengths:
168-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]