RnoINT0157558 @ rn6
Intron Retention
Gene
ENSRNOG00000034089 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:RGD Symbol;Acc:1308806]
Coordinates
chr8:128655611-128655926:+
Coord C1 exon
chr8:128655611-128655731
Coord A exon
chr8:128655732-128655858
Coord C2 exon
chr8:128655859-128655926
Length
127 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
CCCCCCTACCCTCTGGACAGGTT
3' ss Score
10.08
Exon sequences
Seq C1 exon
TCTTGCTGCAGGGCCTATGAGTACATGGGCTTCATCATGGAGAAAGAGCAGTCATACAAGGACGCAGCCACCAACTACGAGCTGGCTTGGAAGTACAGCCATCAGGCCAACCCTGCCATTG
Seq A exon
GTAAGGCACAGGCCGAGGTACACAGGGGCTACTGCCCTGATCCTAGAACCCAAGTCCTGCATCCCGGCAGTTCAGGGAGCCAGAGGGCTCCTCAGTCACCAGAGTGTCCCCCCTACCCTCTGGACAG
Seq C2 exon
GTTTCAAACTGGCTTTCAACTACCTGAAAGACAAGAAGTTCGTAGATGCCATTGAAGTCTGTCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034089:ENSRNOT00000043831:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCAGGGCCTATGAGTA
R:
GCTGTGACAGACTTCAATGGC
Band lengths:
187-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]