MmuINT0167040 @ mm10
Intron Retention
Gene
ENSMUSG00000032514 | Ttc21a
Description
tetratricopeptide repeat domain 21A [Source:MGI Symbol;Acc:MGI:1921302]
Coordinates
chr9:119967196-119967514:+
Coord C1 exon
chr9:119967196-119967316
Coord A exon
chr9:119967317-119967446
Coord C2 exon
chr9:119967447-119967514
Length
130 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TCCCACCCCCCCACCACCAGGTT
3' ss Score
7.94
Exon sequences
Seq C1 exon
TCTTGCTGCCGGGCCTATGAGTACATGGGCTTCATCATGGAGAAAGAGCAGTCATACAAGGATGCAGCAACCAACTACGAGCTGGCCTGGAAGTACAGTCATCAGGCCAACCCCGCCATTG
Seq A exon
GTAAGGCACAGGCCGAGGTACGCAGGGGCTACTGCCCTGATCCTAGAACCCAAGTCCTGCATCCTGGCAGTTCAGGGAGCCAGAGGGCTCCAAATCACCAGAGCATATCCTCCCACCCCCCCACCACCAG
Seq C2 exon
GTTTCAAACTGGCTTTCAACTACCTGAAAGACAAGAAGTTCGTAGATGCCATTGAAGTCTGTCACAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032514:ENSMUST00000035100:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGCTGCCGGGCCTAT
R:
GCTGTGACAGACTTCAATGGC
Band lengths:
189-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types