BtaINT0154295 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010477 | TTC21A
Description
tetratricopeptide repeat domain 21A [Source:HGNC Symbol;Acc:HGNC:30761]
Coordinates
chr22:12514676-12515032:+
Coord C1 exon
chr22:12514676-12514796
Coord A exon
chr22:12514797-12514964
Coord C2 exon
chr22:12514965-12515032
Length
168 bp
Sequences
Splice sites
5' ss Seq
TCGGTACAG
5' ss Score
3.7
3' ss Seq
TCCTCCCTACATCTGGACAGGCT
3' ss Score
5.19
Exon sequences
Seq C1 exon
TCCTGCTGTAAGGCCTACGAGTACATGGGCTTCATCATGGAAAGGGAGCAGTCATACAAGGACGCGGCCGCCAACTACGAGCTGGCCTGGAAGTACAGCCATCACACCAACCCTGCCATCG
Seq A exon
GTACAGTCATCGGGCAGGCACGCGTGCATGAAGGAGGGGCCAGGGCCGGGGACCACCCTCCCGACCCCATATCACAGGGCCTGTGATCTGTTTGTGGTGGGGAACCAGAGGAGTTCTCGGGTTATCAGAGTGCCACCCACTGTCTTTATCCTCCCTACATCTGGACAG
Seq C2 exon
GCTTCAGGCTCGCTTTCAACTACTTGAAAGACAAGAGATTCGTGGAAGCCATTGAAGTCTGCCATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010477:ENSBTAT00000048382:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(48.5=80.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGCTGTAAGGCCTACGAG
R:
TCATGGCAGACTTCAATGGCT
Band lengths:
188-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]