MmuINT0167068 @ mm10
Intron Retention
Gene
ENSMUSG00000034848 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:MGI Symbol;Acc:MGI:1920918]
Coordinates
chr2:66186154-66188380:-
Coord C1 exon
chr2:66188260-66188380
Coord A exon
chr2:66186222-66188259
Coord C2 exon
chr2:66186154-66186221
Length
2038 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTTTTTTCTTGTCTCAACAGGAT
3' ss Score
13.05
Exon sequences
Seq C1 exon
TCCTGCTGCAAAGCTTATGAATATATGGGGTACATTATGGAGAAAGAGCAAGCATACACAGATGCGGCCTTCAACTATGAGATGGCATGGAAACATAGCAACCAGACAAATCCTGCAGTGG
Seq A exon
GTGAGTTCAGCAGACTGGGCCCAGTGTCTTCACAAGAAATAATATATCATTTGTAAATACTATTTGAAATGCACTTTTAGGGCAATACATATACAAGCCAACCTCTATTGTCAATGCTGTATCCTCATCGCGAGTTACTTACCTGATTACTAGGTTCATTCTGCCTTTTTCCTTCTCCCTTCATCCTTCTATTTGGAAAATGGTAATGTGGACAAAAAGTATCCTGTTGTCAGATATATTATGCAAAGGTTACATTCTATCACCACCTAAGGTTCTTTTACTGAGAACCTTCTAAAGCCTTTTAACACTTGAGTAAGGGTTTGGGTCTCTTACCTTTCTCCTGAGCATCATAGACGTAATGAGTTGTATGTGTAGACTCTTGTTTGGGGAGTATTAGCCTACAGTGTCTGTGCAGTTGAGTGTTACCAATAGTGAACTCAGTGATTAACCTCGGCCTCCTGCCGGTAGGGCTCCTCCCAGTGAACTAAGTCCGACTCACTGAAGTCTAGATCAGTTCTGCGATGCCATCTCTACTCCCCTCCCTCTCACAGAGGAGGGTCCTTGAGTGGGAACTTCCTCCTGAGGTGAAAGTATTTGCTGTGCTCTCTCAGAGGGCTGTCACCTTTCCCTGCTTGAGACTGTCCCTTGACACGACTAACCATGGTTCACCAACACTCCCTTTAAACATTGGTGAGAGTTTTTACAGTTGAGAGAGCTGCAGTTTCTGTGGCCACAAAGCATGAGAAATTACTTTGCTCTCTCCGTCCCTTCTGAACTGTTCTACTACATGTGAGTGTGTTTATACGTATGGCTTGGCTCCCTGTGACTATAAAGGCGTTGGTGTTTTTATTAGATTAGGTGATTTCAAGCTATTAACTTAACCTAAGGTGGCAGCAGTCTTTACCAGCTGTGTCGCAATGTTTGACTGCAGCCATAGTCCTCCTCACACTCTGCCATCTGTCCTGCTGGCCCCTGGCTTGGGTTTCTTTAGGATCTGTTAAAATTGATAGATTGGGAAAAGTACAGGAACTAATGATTGTTTATACATCTTCATTTACATATTCATATTATATATCATATGAGATAGAGACACCTTGTAAAATGGAAATGTATTAAATACCCAGAAAATAGAAATAATTTTGATAATTTATTCTTTCAGAGTAATATGTTTCAAAGTTATTTATATACTCTGTTCCTTAGGAAGCTTCAGAAAACACAGAGACTCCAACTCACCAGCTTTTCCCTTATTCTAGTTTATAAGTGATCTTGGCAGCTCTCCCAGAGTTCCTTTCCTAGGTGTTCCTCTGACATTTTTAATTATTTTGTTTGTCCCTGATGATTGTCACTATATCCACTACCCAGTCTGGCTGGCCAAATTAACCTTACACTTTCACAAGAAACCCTCAAAGTCCACACACTATTTCCATAGAATTTCAAATCAGGTGCTGTCACTGCAAATGGCCCCAAATAGTTATGCTAGTACATACATACATACATACATACATACATACATACATACACACATATATATGTGTGTGTGTGTATACACACATATAAATGTGTGTGTAGTTTGTGTGTATATATATGTATGTGTATATGTAGTTATAGTTATATTCCTTGTATAAATATGCATAAGAACACATTTCAAGTGAAAAACACATTTTAAAATAGGAGACCACTAGGAACCAAGAGCCTGTGAGGAGAGGACCTCCTCTCACCTACGCTCAGGTTACATGGCAATCACTAGATGTCTAGATTCACTTCCACTTGTCTGCTGATGGAGTTTGCGCTTTTCAGTGAGCTGAAGAAGCCACACTCGGGGAGCAGCAGTGCTCCCACCCAGCAGCTACTCACTGGGGTCCCTTTTTCCAACTCTGTTCCTTTCTGTTTGCTCATCTTAATTTCACTTTGCTTTCTCCTGCCATGTCTCTTTTCTCTGTATTGTCTGGCCAACAGTTTCCCTTAGGACTTCTCTAATAAGTCAACAAAAGAGGAAGGAAAAAACCACGTATCAGATTTTTTTTTCTTGTCTCAACAG
Seq C2 exon
GATACAAATTGGCATTTAATTACCTAAAAGCAAAACGATATGTGGATGCAATTGACGTATGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034848:ENSMUST00000102718:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(0.1=0.0),PF145591=TPR_19=PU(43.8=68.3)
A:
NA
C2:
PF145591=TPR_19=FE(34.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types