GgaINT0048303 @ galGal4
Intron Retention
Gene
ENSGALG00000012555 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr7:35813624-35815676:-
Coord C1 exon
chr7:35815536-35815676
Coord A exon
chr7:35813771-35815535
Coord C2 exon
chr7:35813624-35813770
Length
1765 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATA
5' ss Score
8.55
3' ss Seq
GCTGTGGTTTATTTTGACAGATC
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTTTCTGTTGTAGCAAAACCAGACCCAGCGAGAGTGGTGGCTGACACTGCAGCATCTAAAGCTCGGATGGGCGTTGGGACCACAGAAGAGTTTGTTCTTCAAAAGCCACTGTTTCAATTGCAAACATATAGTGAAGAGCAG
Seq A exon
GTAATAGTCTGTCATTGTACTGTGTGATTTATTGTATGCAACCATACTGTGAGAGCAATACATGATAATGATTGCGTATCTAAAATAGTACTGTTAATGGCAGAACACAGAATATGATGTATGTAAAACTGAAAACCGTAGGAGCAATGGGTGGAGCCAGCTCTGTGCCCAGGAGTCCGCAGTGCTGCAGCACACAGCAGCGTGCACACAGACTCAGTGCCCCGGGGGCTGCGGTGCTGTCCCTGAGCCACATCTCCCACCAGTGGGGAGGATGTGGGAGCAGGTGGCTGCTGGGTGCCGACTGCTTGCTGAATGCTTTGCTATTGCTCTGTTTCAAAACACCCCTTTCACGCTTTTTCATGCTCACTTTAAAAAGTGCCTCCTATCCACCTGCTCCTGCTGGTGTTGTGCTAAGTATCTGAAGTGAAGTGGAAGCTGCCCTTACTGCGTGGAAAAGCAGTGCCACAGATAACTTCATGGTCCACTATTCTTTGCATTTTGGGATCTTATTACTCATCTCTTCATAAACTGAAAATTAGAGTCGTGACTACCTGCTTGCTGTTGCCGAACTGAAAATCAGATGGGATGTTGTATGTGAGGGCTAAAGGAGAAACCAGTCAGGTGTAAGCAGTGAAGTGGTTTTCAGGTTGCCCTCTCTGCTGAGGACAGTGCTAGCTCTGTTTCAACTGAAGTTAAGCAACAAAGGGAGGGATTTTCTGTTTCCTTTACTACTCTCCATCTGTCAGTGTATGCATTTGGAACTGAGAAGCTTTAAAATGTCTTAAAAAAGGAAGTGCTGGACAAGCATGGTAATAGACATCATTACATTTCAGCTTATTCAATGCTACAATAAAGCTTTTATGCCATGGAACTACGTGATAGCATTTTTCTTTCTGTCAGTATCATTTCCAAATTCCAGAATGGGAATGATTTCAAATGCAAGGGTTTTTGTTTGGCTAAGAAAATTTACCCAAATCCAAATGAATGTTGTGAGGTTTGGAAAAGTCTGTCTTGAGCACGCTCTGAGGAGGTGCACGTGAGGTTGATATGTGAGTTCTCAGAACGCTCTGCCCACTTTGGCTGGTCATGGGCACTGCTTCCTGCTCCTGCCAACACCCAGTGAGTGGCCAAGGGAGCTGAAAAGGACTTAAGGATTTTGTCATATACCTCATGGCAAATTTTAGTGTTAATTTCCCCGGGCCTTAGTTATTGTTATGGATATGGAAGTGGTACTGCCATGGAGACACTAAGCAATGCAATGAAAAAAATCGTCAATGCATTTGAAGTGCTCAGATCCCATAGAAAAAAAACAAAACAAAACAAAACAAAAAACCAACAGGAAGAATTAAAAGTTGTGTCCTGAAAGCAGGGTTGTGCTGACAGAGAACATCAGAGAAGTCAGAATCTCTTTCCTGGGCAGGCTGAGTTCAAGTTACTCAGCTTCTCATCTGCCCTTTGGATTTTGCTGAGGACTGAAAACCAGAGATCTTTGTTAACACAGATTGTGATCATTAGTGTTTAAAAAGGATGATACCAAAATATGTGTAGTGAGTTATTCACCACTGAACTTCTTCACTTCCAAAGGCTCCATGTTGTGACCATAACATTTTTAATCACCTTCTGATCCCTTTTGTTTCAAACATATATAACATAATGTATGTATCTGTACATACATTCACAAATAGCCTTTAGGTATATCTTTATTCGCAGTGTAAGTGAGGAAAGTGTGGTTTTGTTTCATCATTGCTGTGGTTTATTTTGACAG
Seq C2 exon
ATCATTTCTGACCCCAGGCTCCGTGTCGAGTTAGCTCTTCGAGAAGCTGGACTTCATAAAACACTTTATGCAAAAGAGATTTTACCCAAAATTCCTCCACTGAAGCTTCCAAGAAGAGATACGGAATCTACAGTGTTTAAAATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012555:ENSGALT00000020503:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.149 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGTTGTAGCAAAACCAGACC
R:
ACATTTTAAACACTGTAGATTCCGT
Band lengths:
286-2051
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]