MmuINT0030443 @ mm9
Intron Retention
Gene
ENSMUSG00000036641 | Ccdc148
Description
coiled-coil domain containing 148 [Source:MGI Symbol;Acc:MGI:3039583]
Coordinates
chr2:58674109-58680104:-
Coord C1 exon
chr2:58679964-58680104
Coord A exon
chr2:58676112-58679963
Coord C2 exon
chr2:58674109-58676111
Length
3852 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
TTTGTTTGTTTTGTCTACAGATA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTTGCTGTTGCTGTCCAGTCTGACCCAGTTAGAATGATGTCAGAGACACTGGCCTGGAAAGCAAGGACAGGCTCTGAAAGTGAGGAAGAATTCATCCTTCAAAAGCCGCTCTTCACACTGACTACATACAACGAGCAACAG
Seq A exon
GTACTTATGGGAATTGCATTACTGGTGCAAAGTCTGGGCTAAGAACAGGAAGGATTGCTCAGGTGTGCGCTTTGAGTTACAAATGGTTTTTTTTTAATATTTACCTGGAAATGCCCTATATATTAGCATATTTTATATTTGTAAATAATAACACATAATTGCTGTATGACTCTTAAATATTGTAAGAGTGTGACATAAAACAAAACAGCTTAAAATCGTATCTGTCACTGAAAAAGGTTTTGTAACATTTTATTCAAAAGTCAATAGTTACAAAAAAGGTCGTTGGTATTTCTTTAAGGTTCAAAGATTTCTCTGCCCTATTATGAGTTTATATTCTAAATTCATGGCATAGATCCTATTAAATAAGCAACTAATGAGACTGACAGGCAGCACTGAAGACAGCTATCACAAGTTTTGTTCTCAGAGCTAAGGACAAAGCATTTTTCTGTGGAAACACCACGGAGGGATCGTGGAGCTATTTGCAGAAGCTTAGAGTGTGTGGTGGTTGTGGCTGGAACTGAGAAGAGACATTTAAAAGAAATTTTAGCAGAGAAGGATAGGAAAGAAGACATGTGAATGAATGGATGTCACCCAAATTAAGGGAGTAAGCAGTCAAGAGTTTTACAGAACTAGGGAGAACACAGCAAAATCTCAAGAAACCTGTTGCCAAGCGAGTTCAAAGTACCTCTCCTGAGTACTGCATACTTAATGGTCAAAATTTCATTCATTAGTAATAAGATATTTATGAAATAGACACTGTATTCTGGTTCTGTGCAAGAGTGTAGCTCTCGGCTCCACCCTAAATGGGCCAGACTGATCCTTCCTGGAGGAAGCGACTCTCTAGGCCAAGAAGGGAAGTATTATATTCAGAAGTAGTGCACAGAGTGAGACCAGTTCTGTGCTGGATGTGGGGAGAAAATGGAGCGCTCTGCCCTGGCGGTTGGAGAGATGGCGCTTCTGAGCATGAGCAGAGTTAAGGATGGTGGCCAGTTGTTGCTAAACTCATTCAAGATGCTTTACAGTTTAAAGGGAAGAGAGGCTGATGTGTGGGAGAATTACTTTTAGGACAGTGTAGGTTTCTCTACGATTGTTACAGAGGCTAAGCTCAGAGAAAGGAAAAGTCCTAAGGCTCTGGGCCAAGCTATCAGGGGTTTCCCAGGCAGAAAAGACCCAGAGAAGGCCCTTCCTTGAATGCCTTCGCTGTGAAACAGAGGCACGGGCACAGGTAAGTGCTAAAATGAGAGTGGAACCTTGGGCTAGGGCCCAGCCGTGATCCACAGGAAGCTGTTCTCCTCAGACATCTGACCTTTATCCCATGACTAGACATGCTATTTTAAAGCAGGTAAGTTAAATGATGACATTTGTATTTTATCCTCGGATCTCAAATGGAAAATAGATGGATGTTGGGGCAGGGGAGTGGAAGTGGTGTCGAAAGAGTCATGCGCAGCTCCGGCTGGAGAGACGGAGGGGATGAAGAGAGGACGATTCCAAGCCAGACAAGTACTGCAGTTGTGCATTGTGGATTCAAATCCACGCTCCAGATTTACTGGCTGTGTGGGCTCGCCTAAGCTATTAACATCTTTATGTTTGTTTTCTTCATCTTTGAAATAATTACTTGGGAAGTTCTTCTGGGGATTAGAAATAATAAATACCGACTGCCTAGGATATCGCCTGGCATTCAGCAGGGATTCAACAAATTATTGCTATTTTGTGGCTCTGTCCATTAACCATATAAGAACTCATAGGAAAAACAGGCCTGGGGGGGGGGGGGTTGATGTGTTTTGTCCGTGTCGCGTTTAGGGTGAGGAAGTCTAAAGCAGCCTTACAAAAACCTGATTACCAGCCTATGGGGAGGAGAAACCTCTCTCTCCACTTAATTTTTACTCAAAAATAAATGGATAATAATAATAAAAAAATTTAAGGCTCCACAGCCCTGGTGCTGGAGAAAGAGGTGACTCCCAGAGAGAATTCAGGAGTAGACAGCATACGAATCGTAGAGAAAGTGGGAGTCCTTGAAAGTGGGTCAGAATATATGGAGACAGAAGAGAAGACTGGGTCCTAGGCTCAAATGATTGTTTCTCAGACAGGGACCTTTGGGTTATTCTGGCCTCACGCTCCTCACTACCCCAGCCCCGTGTCCGATTGGTTGTCATTGAGTCCTCCTTCCAGACTATGTCTGACAGTTAGGTCGTCTCTACTTCCAGACAGGTTTAGGTATTTATTACTTCATGTCTAGACAGTCCCAGTAGCTTCCTGATCTCCTCCTCCTTCCATCTTTTTTTCCCCTACCACTTTAATTTATCCCGACTTTATGATCAGATTCATCATATGCTGTCACAGTTGGATGCTAAAAGCAGAAACAAACACTGTGGCACTTGCTAGCATGGCCTTCAAGGCTAGGAGATCCAAGACCCAGTCGGAGTGTCCTTTCTTCACCAAGCTCCTCAGTGGCATAGTCTTTTGCCCAAACTCCCCTCATCCTAAAATTGACCTGCTTCACCTCAGCTTTTGAATGTGAGGCCTTCCTGTCCAATTAGACCTCTCTTCCTCCCTCTCTGACTAGTGGAAGGTTACGTCAGACTTCAAGGTTGCCCTAATTGTTTCTTACCTGAGAACATCCTCATGCCAGAAATGCCACACACCTCCACGTTTCTCGACATGAGGCAGAGCCTCACGTTAGTTATCCATGAACCTCCTATTGCTCCCATTCATTCGAACTCATGGAAGGAGCTATTTTCAGATGCTTTTGACTGTATCTTTTAGAGAGTTGTATGATGTCAGACTCAGGTAAAATGTCCATATGTGGTTATCTCTGATCATGTCAAAGAACGTGTTGACATTTAGGATTCATAGGAAAGGGACTAAGGGCCAGGCAAGTATAAATGAGAACAGAAGCTAGGGTATCTGTTTGTCTGCTCCTACTTAGCATGGGGTGGGTGGGACATTCTCTGCTTGAAATAGAAATCCATCCTCAGATTATCCCTTTCAAGGAGTGGGCATGCGTTTATGTGTAATTTACACATTACTAAATGATAGCAAGGTTAAAGTGGCTGTTAGAAGATGCTCAGGGGAGAGATGACTGAGCACTTGGGGATCTTTCGAGGGGCCTGGATTCAGCTCCCAAGAGCGACCTTGCAACTCACAACTTCCCACAACTCCTGATCTGGGTTAATTCCAAACAGGGGCTTCTGTTACCTGTGCCATGGTAGATTGGATAAATACATAAACATTACTTACAAGAATTATTGATTCCATAGCTACATTCTTTCTGTTTTTTAGCTTACAATGTGATTTTTGATATTCAGGATTCATTAACTAACTTACCACACCTTCTCCTAGCCACTGCAAGCACTACACATGCACATGGTACATATACATGCAAGCCGTCATACACTCATACACTTAAAAGTATGGCTTTCTTAAATAACAGTGCCTCAAAACTATATTCTAAAGATTGATTTTATTTATTAAAGTAGATTTATTTTACGATCCTATATGCTTTTAGCCAGCAATAAATAACCATTAATAGTACTGGTGGTAAGGTTCTTTTATTCCATTTTTTTAGTAATTTTAATATGCTGTATTTGATTGATGTAGTACATAATATCAAATTCACTCTATGTTGGAAGTGATGCACTGGAAAGTGATAGTGTGAGAAATAGTGTGGACATTTTCAGTAAAACCTCTGCAGTCACAGGGCTAAGAAGCTTCACCATCCAACCATCCACCTTCAAACATGATGCGACTTGGGAAACAAACCGGAAGGAGAAGATGTGCTTCAGCTAAACGAGCTATTGTTTGCTTAAATCCCGTTTTGTTTTTTGTTTGTTTGTTTGTTTGTTTTGTCTACAG
Seq C2 exon
ATAATTTCCGATCCTCGACTTCGATTTGAGTTAGCACTTCGAGAAGCTGGACTCCATAAAACACAGTATGCCAAAGAGATGTTACCAAAAATTGGTCCTCAGAAGCCTCCAAGGAAGGACACAGAATCGACCGTGTTCAAGGTCTAGAGGGTACATGAGAACGAACACTGCGTGAATACGGATAGTGATGGGCCTGCTTCTAAATGCTTAGAAAAAGACTGCACAGAGAAATCACAGCATTTATTAAACAACCTTCCCTTTTTTTAGCTTCAAAGTTTTGTTCGCCATTTGCTTTTTCTTTAAATAACATGTATTATTACCAAATTTACCAAAATTATCAGACTTCAGTATAGATGTTGTCATTTGGCAAGCTGTTATTTTGGAGGTTGGTTTTTTTTTTTTTTTTCTATGAAGAGGAGCTGAAAATAACCATTTTCAAGGGTTGTCTACTCCACAGGTACATGCATTTCAGCTTGTTACTTCAGTATTTGATGTTTAATTATGGAAGCTTAATTATCATTAATACGTCTATTGTTTCTTGGTTATTCTAAGAGGAGATTCAACTTTTCTCTAAATTTAGAAATCAGTTTGGTACATCATGTTTATGGCAAACCAATTATCTGAACACTCTCAGTTTACAAATCTGGCTTTAAAAGAAATTAGACAGTGTCACTATCACGGGAATACCTGTTTTTGTTTTTAACTGAGAAGACATGGCAGTGTGGTTGTTTAGAAAGAAAAACTGAAATTTTATGATACTTGAAAAGTTATTAAAAGTTCCTAATTATCTAAGAAATCCCTAGATGAATTTCTTGAAAAGAAGTATCTCAAATAAAGCCTGCCTATAAAATTTTGGCTATCTCCAAAAGGAAGCAAGAAAAATTTTCAGTAAGAAAATGTGTTTTTTAAAACTTCTAGGTGCCAATCACAGTAAGGAGACTGATGACTTTTTTTTTCTTTATTTTTCTTTGCTGCCATTTCCTGTATTTCCTGTCCACACCTAGACCCCAGGGGTGTTATCTCTAGGTAGTTCTGAGAATGCTCTGAAAACCACAAAACCCAGGGCTGAGGATGGAGCTCAGCTAGGACACTTGCCTAGAAGCCCAAAGCTCTGACTCTGATCCCCAGCGCCCCATAAACTGGATGTGGTGGGAAACATGAGTCTAGCACTTGGGAGATGGGAAGCAAGAGTATCAGAGGTCAAGGTCATCCTTGGATATATAGTCATTTACAGCCAGCCTGCAATATAGGAGACCCTGCTGAAAAAAAGAGAGAAAGATAGGAGAGAGCAGGCAAGGAGAGATGAAGGGATTGGGAAGAGAAAAAAGGACATCACAGAAAACAGGCTGATTGGGGCTTGTCGTGACCACCCACAGCATGGCAAGTGTGCACAAAATCAGCCCAGCCTGTCAGAATACATTGGCTTCTCTATAAGAGTTCTACGGAGTGGGTGGGGGTGGAGACCTTATCCACATCCCAGGATCCATCCCAATGCTTCCCTACTTCTGCTCTTTACAGCACTATAATGTCTCATCAAAGAATGGAGAAGTCTTAGGAAAAGGTAGAGAGTGGTAGGCATGGATGTCTTGGGGGGTCTTTCTAGGGGTCGAAGTGTTATTTTATGGGACCCTGACCATAAACCCATGGAAAACTGCTGTGACAAAAATCATCGTGTGCAAAACAGCGCGATATGGATGCTGCTGAGCCTGTGGATCCTTACTGTCCTGGATGTCCACACCAAAGTCATGGGATTGTGTCCAAACACTATTGACACATTAACTCTTTTACACTCTCTTAAGAGCTAAAGATTTGGGCTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGGGGTCCTGAGTTTAATTCTCAGCAACCAACCACATGGTGGCTCTCACAACCATTTGTAATGGGGATCCGATGCCCTCTTCTGGTGTATATGAAGACACTGTACTCACATAAATAAAAATAAATAAATAAATATTACAAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036641-Ccdc148:NM_001001178:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.479
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: