HsaINT0029176 @ hg19
Intron Retention
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:25191]
Coordinates
chr2:159027869-159033173:-
Coord C1 exon
chr2:159033033-159033173
Coord A exon
chr2:159028772-159033032
Coord C2 exon
chr2:159027869-159028771
Length
4261 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTGTATTTTTATTTCTACAGATA
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTTGCTGTTGTTGCTCAATTTGATCCTGTTAGAATGATGTCAGATACAATGGCATCAAAAGCTAGAATGGGCATTGAAATTGAAGAAGAATTTATTCTTCAAAAGCCACTCTTCACATTGAATACATACAATGAACAGCAG
Seq A exon
GTAATTATGGAAATTAGCATGACTGATGAAAAAGCCATGATGATGGTAAGGACTGTAGAAGTGTGTGTTTGGGGTTACAACAGTTTTCAATATTTACATTTGAATATCTTACATATTAGCATAATTTTTACTTCTAAATGATAGTACATAATTACTACATAATTCTTAATATTACAAACTAGTTAATAGGCTACCATAGAACAAGAGGTTACCTAAAAATGTTATAAATCTGTCATTGAAGCTTATTTTTTAAATTTTTTTAAAAATGCTTTATAAAATTTTATTTGAGAGCTCTGTATTAATATTGTATTTTGTTGTTTAAATGTTTATCTGTTACATTAAGAATTATATTTAAATTCATAATATAAATTATATTAATAAACAACTGATACTGATGACAAAGCAGAGGAAAGTTTTTAGAAATGAAAATGAACAGAAGATAATACATCAGAGCTAATGATAAAACATTTTTTACGGAAAAAGGTGTTAAGGGCTTATTTAACCATTTCTAGGAACCTAGGGTTCATTTTAATCTGTGCCTGAGAATCTGTGCCTGTAACTGAGAAAGGATTTTAAAAGATCTTTTAGATGGATGGATTGAGGGATGGAAGGTAGGAGGGAAAACAGATGAATGGATGGATGGATGGATGGGTGGATGGATGATATATCAGTCACTGAAATTAAGAGAGAAAGTAGTTGTCAGTTTTACAAATCTAAGGAGAGAAGCTAAATAATTATTTAATTATTTAAAAACCAGGAAACCATCCATTCATCCGCTTATGTCTCTACTTTGTGCGGCATACTTTGCTAGGGACTCTAAAGAGGCATAATTCATTTATTAATTGAACCAATATTTATGGAACATATATTATATTCTGGCTCTGCGTATGGTGCCTGGGCTACATCAGAGCAAGATAGGCTGATCTTGTCTGGAGGAAGTGAGCAAAAGAGCCTACTGGGGAAGGAAAGTAGCATGTGTAGCAACAATGCCACCAGGGTGGGATCAACTCTGTAATGAATGTCTAAGGGTTGCCCTAGGAAGAAGAAGGGAATGAATGGCTAACCCCGACTGGAGAAGTCAGAGAAGGTGTCAGAGAGGAAACTTCTGAGCCCTATCTTAGTCAAAGATTTTTGGAAGCAGTAGCAAAATCCACTCCAGATGATTTACGATAATAACAACAAAAATAGGTTGTGGGGGAGGATACATAGGGAGAAGGATTAATTACAAGGTTTAAGAGGTGTCTCTAGATCCTAGCTGCTGAAGTGGGGAGAATAGCTGAGGCTTGAAAGGATTGAAATCAGAAGCTAAAAAGTCTCAGGCCGCTGGGCTAACCCTTATACTCGGTTGACCTATTTCACCTCTGGGTTTGACCAAGCGGAAGAGGGTGGGGCAAGGCTTTTTCCTAGTATGTCTTCAGTGTAAGATACATGACAAGGGGTGCATGACAAGTGCTGGGAGAGGAGACTGGAAACATGTGTTAGGTTCAGGCGCTGAAAAGCATAGTAGGTCTTGCTACTAAGGCATTTGACCAGTAGTAGCAAGTAGGCCTTGCTACTAAGGCATCTGTATGCAGATGCCAGACTTTGAAGCTTTAAATTATATACAGTCATGTGCCCCATAACAGTGTTTTGGTCAAAGACAGACCACATATATGTTGGTGGTCCCTTAAGATTATAATTGATCTGAAAATTTTCTATTGCCTAGTAGTGTCTTAACATCATAGCACAATGCATTTCCTCTTGTATGTTTAGTTTCACAAGTACTTAGCATTGTGTTACAACTTCCTACAGTAATGAGCACAGTAACAGCTCATTACTTCCTACAGTAATGAGCACACTAATGCTGTACAGGCTGTAGCCTAGGAGCAATGGCCTATATCATATAACCTAGGTGTGTAGAAGGCTGTACCATCTCAGTTTATGTAAGTACATGCTATGACATTCACACAACAAAATTGCCTAAGGACACGTTTCTCAGAATGTATCCCTGTCATTATGTGACACACAACTGTAATCAGACTTATGTTTTAGCTATGTGTCCTGAATGGAAAATTGGTGGGGGTGGGCATGGGTTGGGGTGAGTTCCTTTTAAAATGGCAGAGCCTTCATAGAAGTAGTGGTGGTGGTGGGGTCATGAATGGCTCTGGCTGAGAAAGGGAGAGGACAAAGAAAGTAAGGATGATTCGAAGCTAGACAACAAGTAATATTAAGAGCTGGTGTTTTGGATTCAAATCCACATCCGCTGTTTATTGGCTGGGTGCATTTGTATAAGCTATTTACGTCTTTATGCCTTGTTTTCCTCATCTGTAAAATAATTATTTACAAAGTCCTTGTGAGCATTAGAGATAATAAATGTCCACTGCCTAAAATATTTCTTGGTACCCAGTAGTAATTCAGTAAATTATAATCATCTGGTGGTGCTGCCATTAACCATTTAAGAATACAGAAAGAAAAACAGATTTAGGGAAAGAGAGAATTTGTTTTACTTATACCATGTTTAGGGTAAAAATATCTAGTACATATTTACAAGAAACTGATGGGCTGCCTGTGGGGAAGGGAATTGGGAAGATGGAAGTTCCGGTAGAGGGGAGATCTCCATTTCACTCTCTAGCTATGCAAAAATTGAATAATAAAAAAAAATTTAAGCCTCACAACATGGAACTGAAAAGAGAGGTGAGTCCTAGATGTAATTTGGGAGTCAATGGCATACAGGTTGCACATGAATCACTGGAGCACATGAGAGCAGACCAGGGAGAAGACATTGAGACAGAAGAGGAAAAACCTGGGTCTTAGGCTCATATTTATTGCTTCTCAGACACAAATCTCTGTATTATTCTTGACTTCATACTCATCGTTGCCCCAAGCCCTGTATCTGATCAACTGCCAAGTGCTATTGATTCTTGTTTTCATAGTGTTTCTGACAATTATCTCTTCCTTGCTACCAGCCAAGTTCAGACATTTATTACTTTATGTCTAGACAATTGTAGTAAATTCCTAACCACTCTCTCGGCCTCCATTTCTTCTTTCCCTGCCACCTTAATTTATTCTGAACTTACAATCAGACCCATCTTCCTATGCAACTACAATGATTATATTATTTTTATGCAAAAACTAGAAACAAACATACCCTAGTAGCTCCTTAGACTCGGCATGGCCATGCAAGCCTTTTAAGTTCAAGTCCTAGTCTGAGAAGCATCTGTTTCCAGTGTTCCTCAATGGTAACCAGTACTCTGCTCAAACCACCCTTATCCCAAGTTGGCCTATTTCACCTCTGAGTTTGTAGGTGTCTTCCTTTCTCATTAGGTCTCTCTTCCTCCCCAGTCTGCTTTATAGACTAAGTTGGACTTTAAGGGTAGTTCAATTGCTCATCTTCACCTGAGACCATCCGCATGCCGCCACCACCAGGAGATGCACCCCCATGTTTTACTACTTTTAGGGCATCTGCCACATGTTGCCATAATCTGTAGTTATCTGTGTACATTTTTATTGCCCCAGTTCGCCTAAGAGCTCCTGGAGGGGCTGCTTTTACTAGCTTATTATCACATCCTCTAGGGGGACTTCAAATCCATGTAAAATGCCTCATTAGGTAAAATCCATATGTGGCCACCTTCTTATCATTTCAAACAGTCTCTGTTGACATTTAATATTCATAGGAGGAGGGGAAGAGGAATAAGATCCAATCAGCTATAAATGAAAACAGAAGTTGAACTACTCATATGTCTACTTCCACTTAGAATCAGATCGATGGAGGCATTTTCTACTTCTGTTTGAAATAGAAATCCAGCCTTGGAAGAAAAGTTCTATTGATTTTGTTTTTCAAGTGGTGGCCATGTGTTTAAACTTAATTTACATATTGCCAGATGATGGAGAAATTAAGATGCTTTTTTTGTGGCTTAGATTTATTTTAATCAATGATTATCTGTATTTTATAATTCCAGCCAGCAATAAGTGATAAATCAATAGTAGCACTGAAAGTAAGCTTCTTTTACTTCATCTTTTAATAATTTTAACGCATTATATTTTGACTAATCTAGTACACTATGTTCTATATACCCTACATGGGAAACCACTGATGTACTGAAAAGTGATAATGTCAAAAAGGTTTAGATGTTTCCAAAATATAGTCACTGTATTCACAGTTTACTGTCACCTAGTCATCTGTCCAGTAAAAACAAATTAGTTTGGGAAAACATGGAACTAAATGTTAAAAGTTATTTTAGTTCAATGAATTGTTATTTAAATTGTATTTTTATTTCTACAG
Seq C2 exon
ATAATTTCTGACCCTAGACTTCGCTTCGAGTTAGCACTTCGAGAAGCTGGACTTCATAGAACACTTTATGCTAAAGAGATATTACCAAAAATTAGTCCTCAAAAACCTCCAAGAAAGGACATGGAGTCTACTGTATTTAAAATATAGAGCTCATCCTCAAATTCTATATGTAAAGAGCATTTTTCTTTGAAAACATGTATATGGATAATAATAATTACTACTTTCTAAAATGTTTGAAATATCAGACATAGAAATCATAGCATCTATTAAAACAACTTTGCCTTTCTTTTGTGATTCTTAGAATTTTATGCACTATATTTCCTGTATCTTTAAGTTATATTTAATAGTACTAAATTCCCCCAAATTATGGAACTTAATTATGGCACATATAGTACTTATACTATAATTTAGTAAACTACATGTTGGAGGTTATGTTATCCTATAAAAAGAGCTCAAAATAACTTTGTGAGAATTATAAATTATGTAGCTGCTACCTGCTAATGTTCATTTCTGCTTGTTATTTCAGAATTTGACTTTTTAATTATGGAAGCTTCATTATCATTAATACTTCTATTATTTCTTGATTATTATAAGAGGAGACTCAACCTTTCTCTAAATTTAGAAACCAATTTGGTACACCATGTTTACTGCAAACCAATCATCCAAACAATTTCATTTTGCAAATTAGCCCTTAAGAATAAATTAGAAATTAGAAATAGCATTTCAAGCATGGGAATATCTGTTTTGGTTTGGAAATATATATATTTGTGTGATTGTTTAGAAGAAATATTTAAAATTTCATAATATTTGGAATGCTGTCAAAAATTCCAAATTATCTATTAAATATTTAGATGATTTTATAGAAAAGGAGCATTTAAAATAAAACTCAAACATAAATATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237-CCDC148:NM_138803:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)