HsaINT0029176 @ hg38
Intron Retention
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:158171081-158176661:-
Coord C1 exon
chr2:158176521-158176661
Coord A exon
chr2:158172260-158176520
Coord C2 exon
chr2:158171081-158172259
Length
4261 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
TTGTATTTTTATTTCTACAGATA
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTTGCTGTTGTTGCTCAATTTGATCCTGTTAGAATGATGTCAGATACAATGGCATCAAAAGCTAGAATGGGCATTGAAATTGAAGAAGAATTTATTCTTCAAAAGCCACTCTTCACATTGAATACATACAATGAACAGCAG
Seq A exon
GTAATTATGGAAATTAGCATGACTGATGAAAAAGCCATGATGATGGTAAGGACTGTAGAAGTGTGTGTTTGGGGTTACAACAGTTTTCAATATTTACATTTGAATATCTTACATATTAGCATAATTTTTACTTCTAAATGATAGTACATAATTACTACATAATTCTTAATATTACAAACTAGTTAATAGGCTACCATAGAACAAGAGGTTACCTAAAAATGTTATAAATCTGTCATTGAAGCTTATTTTTTAAATTTTTTTAAAAATGCTTTATAAAATTTTATTTGAGAGCTCTGTATTAATATTGTATTTTGTTGTTTAAATGTTTATCTGTTACATTAAGAATTATATTTAAATTCATAATATAAATTATATTAATAAACAACTGATACTGATGACAAAGCAGAGGAAAGTTTTTAGAAATGAAAATGAACAGAAGATAATACATCAGAGCTAATGATAAAACATTTTTTACGGAAAAAGGTGTTAAGGGCTTATTTAACCATTTCTAGGAACCTAGGGTTCATTTTAATCTGTGCCTGAGAATCTGTGCCTGTAACTGAGAAAGGATTTTAAAAGATCTTTTAGATGGATGGATTGAGGGATGGAAGGTAGGAGGGAAAACAGATGAATGGATGGATGGATGGATGGGTGGATGGATGATATATCAGTCACTGAAATTAAGAGAGAAAGTAGTTGTCAGTTTTACAAATCTAAGGAGAGAAGCTAAATAATTATTTAATTATTTAAAAACCAGGAAACCATCCATTCATCCGCTTATGTCTCTACTTTGTGCGGCATACTTTGCTAGGGACTCTAAAGAGGCATAATTCATTTATTAATTGAACCAATATTTATGGAACATATATTATATTCTGGCTCTGCGTATGGTGCCTGGGCTACATCAGAGCAAGATAGGCTGATCTTGTCTGGAGGAAGTGAGCAAAAGAGCCTACTGGGGAAGGAAAGTAGCATGTGTAGCAACAATGCCACCAGGGTGGGATCAACTCTGTAATGAATGTCTAAGGGTTGCCCTAGGAAGAAGAAGGGAATGAATGGCTAACCCCGACTGGAGAAGTCAGAGAAGGTGTCAGAGAGGAAACTTCTGAGCCCTATCTTAGTCAAAGATTTTTGGAAGCAGTAGCAAAATCCACTCCAGATGATTTACGATAATAACAACAAAAATAGGTTGTGGGGGAGGATACATAGGGAGAAGGATTAATTACAAGGTTTAAGAGGTGTCTCTAGATCCTAGCTGCTGAAGTGGGGAGAATAGCTGAGGCTTGAAAGGATTGAAATCAGAAGCTAAAAAGTCTCAGGCCGCTGGGCTAACCCTTATACTCGGTTGACCTATTTCACCTCTGGGTTTGACCAAGCGGAAGAGGGTGGGGCAAGGCTTTTTCCTAGTATGTCTTCAGTGTAAGATACATGACAAGGGGTGCATGACAAGTGCTGGGAGAGGAGACTGGAAACATGTGTTAGGTTCAGGCGCTGAAAAGCATAGTAGGTCTTGCTACTAAGGCATTTGACCAGTAGTAGCAAGTAGGCCTTGCTACTAAGGCATCTGTATGCAGATGCCAGACTTTGAAGCTTTAAATTATATACAGTCATGTGCCCCATAACAGTGTTTTGGTCAAAGACAGACCACATATATGTTGGTGGTCCCTTAAGATTATAATTGATCTGAAAATTTTCTATTGCCTAGTAGTGTCTTAACATCATAGCACAATGCATTTCCTCTTGTATGTTTAGTTTCACAAGTACTTAGCATTGTGTTACAACTTCCTACAGTAATGAGCACAGTAACAGCTCATTACTTCCTACAGTAATGAGCACACTAATGCTGTACAGGCTGTAGCCTAGGAGCAATGGCCTATATCATATAACCTAGGTGTGTAGAAGGCTGTACCATCTCAGTTTATGTAAGTACATGCTATGACATTCACACAACAAAATTGCCTAAGGACACGTTTCTCAGAATGTATCCCTGTCATTATGTGACACACAACTGTAATCAGACTTATGTTTTAGCTATGTGTCCTGAATGGAAAATTGGTGGGGGTGGGCATGGGTTGGGGTGAGTTCCTTTTAAAATGGCAGAGCCTTCATAGAAGTAGTGGTGGTGGTGGGGTCATGAATGGCTCTGGCTGAGAAAGGGAGAGGACAAAGAAAGTAAGGATGATTCGAAGCTAGACAACAAGTAATATTAAGAGCTGGTGTTTTGGATTCAAATCCACATCCGCTGTTTATTGGCTGGGTGCATTTGTATAAGCTATTTACGTCTTTATGCCTTGTTTTCCTCATCTGTAAAATAATTATTTACAAAGTCCTTGTGAGCATTAGAGATAATAAATGTCCACTGCCTAAAATATTTCTTGGTACCCAGTAGTAATTCAGTAAATTATAATCATCTGGTGGTGCTGCCATTAACCATTTAAGAATACAGAAAGAAAAACAGATTTAGGGAAAGAGAGAATTTGTTTTACTTATACCATGTTTAGGGTAAAAATATCTAGTACATATTTACAAGAAACTGATGGGCTGCCTGTGGGGAAGGGAATTGGGAAGATGGAAGTTCCGGTAGAGGGGAGATCTCCATTTCACTCTCTAGCTATGCAAAAATTGAATAATAAAAAAAAATTTAAGCCTCACAACATGGAACTGAAAAGAGAGGTGAGTCCTAGATGTAATTTGGGAGTCAATGGCATACAGGTTGCACATGAATCACTGGAGCACATGAGAGCAGACCAGGGAGAAGACATTGAGACAGAAGAGGAAAAACCTGGGTCTTAGGCTCATATTTATTGCTTCTCAGACACAAATCTCTGTATTATTCTTGACTTCATACTCATCGTTGCCCCAAGCCCTGTATCTGATCAACTGCCAAGTGCTATTGATTCTTGTTTTCATAGTGTTTCTGACAATTATCTCTTCCTTGCTACCAGCCAAGTTCAGACATTTATTACTTTATGTCTAGACAATTGTAGTAAATTCCTAACCACTCTCTCGGCCTCCATTTCTTCTTTCCCTGCCACCTTAATTTATTCTGAACTTACAATCAGACCCATCTTCCTATGCAACTACAATGATTATATTATTTTTATGCAAAAACTAGAAACAAACATACCCTAGTAGCTCCTTAGACTCGGCATGGCCATGCAAGCCTTTTAAGTTCAAGTCCTAGTCTGAGAAGCATCTGTTTCCAGTGTTCCTCAATGGTAACCAGTACTCTGCTCAAACCACCCTTATCCCAAGTTGGCCTATTTCACCTCTGAGTTTGTAGGTGTCTTCCTTTCTCATTAGGTCTCTCTTCCTCCCCAGTCTGCTTTATAGACTAAGTTGGACTTTAAGGGTAGTTCAATTGCTCATCTTCACCTGAGACCATCCGCATGCCGCCACCACCAGGAGATGCACCCCCATGTTTTACTACTTTTAGGGCATCTGCCACATGTTGCCATAATCTGTAGTTATCTGTGTACATTTTTATTGCCCCAGTTCGCCTAAGAGCTCCTGGAGGGGCTGCTTTTACTAGCTTATTATCACATCCTCTAGGGGGACTTCAAATCCATGTAAAATGCCTCATTAGGTAAAATCCATATGTGGCCACCTTCTTATCATTTCAAACAGTCTCTGTTGACATTTAATATTCATAGGAGGAGGGGAAGAGGAATAAGATCCAATCAGCTATAAATGAAAACAGAAGTTGAACTACTCATATGTCTACTTCCACTTAGAATCAGATCGATGGAGGCATTTTCTACTTCTGTTTGAAATAGAAATCCAGCCTTGGAAGAAAAGTTCTATTGATTTTGTTTTTCAAGTGGTGGCCATGTGTTTAAACTTAATTTACATATTGCCAGATGATGGAGAAATTAAGATGCTTTTTTTGTGGCTTAGATTTATTTTAATCAATGATTATCTGTATTTTATAATTCCAGCCAGCAATAAGTGATAAATCAATAGTAGCACTGAAAGTAAGCTTCTTTTACTTCATCTTTTAATAATTTTAACGCATTATATTTTGACTAATCTAGTACACTATGTTCTATATACCCTACATGGGAAACCACTGATGTACTGAAAAGTGATAATGTCAAAAAGGTTTAGATGTTTCCAAAATATAGTCACTGTATTCACAGTTTACTGTCACCTAGTCATCTGTCCAGTAAAAACAAATTAGTTTGGGAAAACATGGAACTAAATGTTAAAAGTTATTTTAGTTCAATGAATTGTTATTTAAATTGTATTTTTATTTCTACAG
Seq C2 exon
ATAATTTCTGACCCTAGACTTCGCTTCGAGTTAGCACTTCGAGAAGCTGGACTTCATAGAACACTTTATGCTAAAGAGATATTACCAAAAATTAGTCCTCAAAAACCTCCAAGAAAGGACATGGAGTCTACTGTATTTAAAATATAGAGCTCATCCTCAAATTCTATATGTAAAGAGCATTTTTCTTTGAAAACATGTATATGGATAATAATAATTACTACTTTCTAAAATGTTTGAAATATCAGACATAGAAATCATAGCATCTATTAAAACAACTTTGCCTTTCTTTTGTGATTCTTAGAATTTTATGCACTATATTTCCTGTATCTTTAAGTTATATTTAATAGTACTAAATTCCCCCAAATTATGGAACTTAATTATGGCACATATAGTACTTATACTATAATTTAGTAAACTACATGTTGGAGGTTATGTTATCCTATAAAAAGAGCTCAAAATAACTTTGTGAGAATTATAAATTATGTAGCTGCTACCTGCTAATGTTCATTTCTGCTTGTTATTTCAGAATTTGACTTTTTAATTATGGAAGCTTCATTATCATTAATACTTCTATTATTTCTTGATTATTATAAGAGGAGACTCAACCTTTCTCTAAATTTAGAAACCAATTTGGTACACCATGTTTACTGCAAACCAATCATCCAAACAATTTCATTTTGCAAATTAGCCCTTAAGAATAAATTAGAAATTAGAAATAGCATTTCAAGCATGGGAATATCTGTTTTGGTTTGGAAATATATATATTTGTGTGATTGTTTAGAAGAAATATTTAAAATTTCATAATATTTGGAATGCTGTCAAAAATTCCAAATTATCTATTAAATATTTAGATGATTTTATAGAAAAGGAGCATTTAAAATAAAACTCAAACATAAATATTTGACTATTTCTAAAAAATAATTTTTCAAGCAGAATAACAAGTTAGTGTTGTTGAAAGTTGCCATTGTTACAGTTAAGATTACCCCACTCCTTTTTCTGTCTATTGCAGCTCCCTGACATTTCCCACCTACCTCCCAGGGGTTGCAGCCTCTGTGCAATTACTGGAATAATGTAAAAAAAAAAAAGCCCAATCCAACTAGTGGAATCTTTGACTTTATGATTGTCCCCAACATCATGGAAATAAAAAATACAAGTACAGTCCCGTTAGAATAAATCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237:ENST00000283233:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.229
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development