GgaINT0048560 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:21413334-21416459:+
Coord C1 exon
chr7:21413334-21413690
Coord A exon
chr7:21413691-21415973
Coord C2 exon
chr7:21415974-21416459
Length
2283 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TGTATTCTCTCATCTTTTAGGTT
3' ss Score
12.52
Exon sequences
Seq C1 exon
CTTCGAGTTTTTAAGCTGGCAAAATCTTGGCCAACTCTAAATATGCTGATTAAGATTATTGGCAACTCAGTGGGGGCTTTGGGTAATTTGACCCTGGTGCTGGCCATCATTGTGTTCATTTTTGCTGTGGTTGGGATGCAGCTGTTTGGAAAAAGCTACAAGGAATGTGTCTGCAAGATCTCCAGTGACTGTGTGCTTCCACGCTGGCACATGCATGACTTTTTCCACTCTTTCTTGATTGTATTCCGAGTTCTGTGTGGAGAATGGATAGAAACAATGTGGGACTGCATGGAGGTTGCAGGCCAAACCATGTGCCTTATTGTTTTCATGCTGGTCATGGTGATTGGAAACCTAGTG
Seq A exon
GTATGTGATGAACACTTTTAAATTGTGATACAAAAATATATATTATGTACAGCTAGACAATAAGAATGTTATGCTTCTATTTGGAAGAAAGAGATAACTGCTTGAGCTAGATTTTGGGTAAAAAAAAAATCATTCTCTTTGCTTTTTCACTTTTATTTCCATTCAGTGAACTGCTGTTACTAGGGCTGTAGGAATGTATGAATGCACCAAAATGACTCACTGTGCACCCTACCATGGGAGTGATGGAACTAATTCACAGATGTTATTTAAATCCAGATGTTATCAGAACTCATCTTGAAATAATAAAGATTATGCTGCACCAGCTCATGGGCAGCATCTTGTTTGGAGATTTAAAAATAAAAAAGGACTTTCTTGCACTCATTGCAGATAATTCTGACACTAATACTTCTGACTTAATTAAAACAAAGTATGATATAGTTGTTATAGTAGCATATATTGAATTTAAGTACTCAACTTTTTGCCCTGCTTAGGTGTAGAAAGAAACCCCTAATATTTTCAGAGCGATTGGTCTTCCCTACAAAAAATGTGCTTCAAAAAATGAAAGTTTCTAATGCAAAATCACAGAATATTTTTTTATAGAAAAATTTTAATTCATGCTGACAATTAATGATGAAAGGTTCACATATATCATTGTGAAAACTTCTTAGAAATCAGGATTACAATTGGAATGCACAATTCATGTTTACACTTTAAGATTTCTTTTAATGTTCACAGTTAATTCTGAAATGCCTGGAATTTATATTTCATTGTATGTCAAAATTCTCTTCCTTTTGTGATTGACTTTAGTGATTTATTTTTATGATGAATTCACAATGTTTGTGTCCTAGTTGTTCAGACAACTTTGCAATCTTAACATTAGATTTGCAGAAATGTGAAAGCCTGAGAAAATTATTTATGATCAGTAATGCACTCCTTATTTTTTCAGCATTAACTTCTGGATATAAATACTGTTTCAGATTCATATTGCTTCATCTTTCTTTCAAATATTTACTTATTCAGATCTGTTGTTGTTGTTGTTTTTCCTGGAATTGTGAAGGTCTGAAGAATTACATGTTGAATAGAGTTAAAATGAGAGGTCTAACACATTTAAATAAGGGGAAATTTATTTCAGATAGGACTTGAGGTTTTTTTGGTAGCTTAGAGGGTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGTATCTTGAAATTATATAAATATGATAGAGAACAAAGCATTTTTTCTCAAATTCAGTAGAAGGAAGTTGATGTAGGCTGTCATTTTGCAGTGTCATGACAGCTTTTGATGCCTTGTGGCCTCCACTTAATCCAAATATAGGAAAGACCATGTTGAAGTCTTTTCAGCCATTTACCAATCCATTCCTTTAATAATGTGATTTTATACAAAGTTGTCATATATAAAACTGAAGGTATGAAATGATTTGTTGCTTGTAGGCTTTAGGGAAATAACTGTAGTTTATTGGAGGTGACATTAAAACAACAATAACGATGTTTGAATTTTGAAGTAACAAGCCACAGTTAGGACTGGTATCTGCTGATGAGGAAAGTCTGTTTTACTTTGAATTCCTATGTAAGATCAAATAAATTTTTCTTCTTTGCCAAGAGAAAAAGGAAAAAATCCAATTATAAATAATGTAATTATTAGTAACTGAGATTAAAGTAAAAATTTCATTTTGAAATATTCTTTCTATTCTTTTTACAACAAGCTTTATAGGACTTAAGAGAAAAGCTCAGAATTAACAGAATATCACAGTTTTATGATATAATCCTTCAAACACTATGTAGAAAATATAAGTAGGTTATTATAGCATTAACTGATGTAAGTTTCTAAAATAAATGCACCATAGAAATCTATCTAATTTTATAGGATGATACTTTTAAATTCTACTTAACTTCCAGGTGATTCCACTAAGAGATTTAGAAAGAAGCATTTCAGACCTCTGATGGATGTGTATAGCTACAGTTTTGTAATTTTTTAAATTTTATCTTACACTTCAAACAACCATGCTATATCAATAAAATAAAATAAAATAAAATCAGGAAAGAAAAAATGTTTAGATGTTAGCTTGTCCGTTTCCATCTTCTTAATATTGACCAGACCAGTAAGGAGAGGTTTTGTAATGGGAAGTACTAATTGGTTGTCTAAAATTAGCAAGTGTGAATGTTCTTCAAAACAAGCTGTGCTTTTTTTACACTATCCTATAAAAATATTAACTTCTTTACGCATGTATTTATTATACAGTTGTATTCTCTCATCTTTTAG
Seq C2 exon
GTTCTGAACCTGTTTCTGGCCTTGCTGCTGAGCTCGTTTAGCTCAGACAACCTTGCTGCTACAGATGATGATAATGAAATGAACAATCTCCAGATTGCTGTGGCAAGAATTCAGAAGGGAATAGATTATATTAAAAAAAAGATACAGGAATTCATACAAAAAGCCTTCGTTAGAAAACAGAAGGCTTTAGAAGAAATCAAAGCACTTGAAGAGATAAACAACAAGAAAGACAGCTGCATTTCCAATCATACTGCTGTTGAAATAAGCAAAGATATGAATTATCTTAAAGATGGGAATGGAACTACCAGTGGTGTAGGCACAGGCAGCAGTGTGGAAAAATATGTTGTTGATGAAAGTGATTACATGTCCTTCATAAACAACCCAGGCCTCACCGTGACAGTGCCAATTGCTGTTGGAGAATCTGACTTTGAAAATTTAAATACAGAAGAATTTAGCAGTGAATCTGATATGGAAGAAAGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040:ENSGALT00000017981:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(51.1=80.8),PF065128=Na_trans_assoc=PU(5.0=5.8)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.2=4.9),PF065128=Na_trans_assoc=WD(100=85.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]