GgaINT0048678 @ galGal3
Intron Retention
Gene
ENSGALG00000011104 | GLUC_CHICK
Description
NA
Coordinates
chr7:22700975-22702012:+
Coord C1 exon
chr7:22700975-22701136
Coord A exon
chr7:22701137-22701958
Coord C2 exon
chr7:22701959-22702012
Length
822 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
GTTGTGGAATTCCACTACAGCCA
3' ss Score
2.24
Exon sequences
Seq C1 exon
ATCATTCAAAGCTTCCCAGTCTGAACCATTAGATGAATCTAGGCAGCTGAATGAAGTAAAGCGTCATTCACAAGGCACATTCACCAGTGACTACAGCAAGTACTTGGACAGCAGACGAGCTCAGGATTTTGTGCAATGGTTAATGAGCACTAAAAGAAATGG
Seq A exon
GTAAGCCTTTTTGGTCACATTGCTCTATCCATACTGATAAAACAGCCAAAAATCAGAACTAATTCCATTTCTTTATTTCAGCTTCCCATCACAGACCATATGTAATCCTCAAATTACTAATGTACTTAGTGGAAATTTATATAGAACTCTAATATGTTATTAGAAATGGGGAATATGTACAAAATTAGTCAAAATTGATTGGATAAATTAGATGTAGAGTCATTATATTATCTAGTATGCGACCTAAAATGAGACTGTATCTCAGCCTCTTTGGGACAGATAGCTCATTCACTGAAACAAATTTCAATATGTACAAGGTACACCAATATAGGGTCAAAATGTAGCTGCTGGGCCTTCATAGAACCTTCTATTCATAGTTGCTCTAATCCTGAAGTTTCATTTGTGAAAAGAGAGCTGAGATTTAAGCTTAATTGACCAATGGTCTTCAAGTGTTCTGTTAAGGCATGAGTTGGCATGGTTTTTTGAAGGTACAGTTTGCTTAAACAAAGGCTAACAAGCTAAGAGGATGAATAATGAAATAGCAAGTAATTCTATGCCCTATGTTCTGGAGAAGATTTGCCCACAGAATCAAAAAATCTGTTATATGAATCTTTTAAATCACTGTGGAAATCTTTAAAGTAATCATTTCTAGATATAGTATTAATTTAAATACATAAGCCTGAAAATATTTATAATGTTCATTCATCATTTGTGGTTGTTTATGATAATACATAGATAATAACCAATAGAATTTTATCAGCTCATTCATGCTCTGCAATGTACTGCTAATAATGATCTAATGGTTGTGGAATTCCACTACAG
Seq C2 exon
CCAACAAGGACAGGAGGACAAAGAGAATGACAAATTCCCGGATCAGCTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011104:ENSGALT00000038393:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0012315=Hormone_2=WD(100=50.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTCAAAGCTTCCCAGTCTGA
R:
CTTGAGAGCTGATCCGGGAAT
Band lengths:
215-1037
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]