GgaINT0048679 @ galGal3
Intron Retention
Gene
ENSGALG00000011104 | GLUC_CHICK
Description
NA
Coordinates
chr7:22701959-22704765:+
Coord C1 exon
chr7:22701959-22702012
Coord A exon
chr7:22702013-22703587
Coord C2 exon
chr7:22703588-22704765
Length
1575 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
GTTTCTTGTACCTCTTTCAGTAA
3' ss Score
7.41
Exon sequences
Seq C1 exon
CCAACAAGGACAGGAGGACAAAGAGAATGACAAATTCCCGGATCAGCTCTCAAG
Seq A exon
GTATTCTATTTGTTACAAACTTGTTACTCAAAACTAGGTTGAGTTAATTTTCTGTTAAAAAAGAAATAAATAAACTGGTATTCTTTAAAATGATAACATAATCAGAGAAATACTTACCAAAAGAAATTATGCTGCACCTGTTCTTTTTATCAGGAAAGAGAAAACATCTGCTTTTGATGCCTGTACATGTGTGCTTTTGCTATGTGCAATGACTTCAAGAAACGCAATAGCATGAGAATAATATATACCAGGAAAGGACAAAAAAAAAAAACAAAAAACAAAAACCTACAGAAAAAGCTACAGGAAAATCATTGTGTTGTGAGAAAGAAAACAAATTACAACACTAACAAAAGGAAAATGGCCAGGCACAAATTTGTGGAGGGCTGATAAAACACAATACAGTATTCAGCCCTCAGCATTCAGTCCCATTTTATACAAATCTATCATTACAGAAAAAAAAAAAAAAAAGAAGAAAGAAAAAGAAAAAGAAAGAAAGAAAAGAAGAGAAAAAGAAAAGCATTTGTGCTGAATGCTTAAATTTTGTTTCCTGTGAGTCTAGGATAGAGGTCAAGGAGTTGGAAATTTGGAAAAAACAACAGCCACAACAACAAATCTCTGTTTGCCAAACAGATTGAAATACTTACACTTATTTTTTCTTTTGATATACTTACACTTATTTTTTCTTTTTGATTACAAAAATTCTTCCATTCTAAACACTATCAATATAATACAAAATCTTTCAGCTTCAGTGAAACAGCATATCTTAACAAAATTAACATTTTATCTAGTTAACATGCTGATGGGAAGTGCAGATGGTACTAAATTGGGAGGAATGGTGAAATCCCAGGAAGACAAAAAAATAATACAAAACGCTAAAGGCCCTGGAAGTTTGGCAGAAATCAGCAAACTCTGAAATAGAAATTCAAGGGAACTTTTCATGGGAATATATCCCAAAACACTTCTTCTTCTCAATGCAGCTTGTCTTCCTAAGTGTTGGTGTGACATAATTTTGCTATAAATTTGAGAAAGAAGCAGGGGTAGGATTGGGAAGCAATTTCTTTTCTATTAAGCTAGAGTTTATCAAGTTTGAAATTGTTCCAAGATTATTACTTTGTTGAAAACAATGGATATTCACAAAACAATTCAAAATTAAGCAGAGTAATATCAGAAAGATAAGTCTGAGGACTTTGGCTGAGAAATAATGAAGATGAGCACAGAAGGAGTAGCTTAATGGAATTTTTAATTAGTGCAGTTAGAGGTAACAAAAAGTATGTCTGTAGAATATGGTAGTTTACTGTGCAGAGCTAATTGACCTAGCAGAAGACCGATCCAGTGCAGTTATACATGCTTTCAGTACCTTATTTGTTTAGAGCTAGTTCAGTTAATACAAAACTGTACTGTGTAGCATATACGTTGCTTTCAGAACTGAAAAATGAAAATATCAATAGTAATTTGAGCAGCAAAGAAAAACTCTCTCTCTGATGCAGAATGTTTAGTGGGAAATTTAAATTATTAAATGCTGAAAAGATGTGATAAGTAATGCAGTCTGATCCTAGTTTCTTGTACCTCTTTCAG
Seq C2 exon
TAATGCAATTTCCAAGCGTCATTCTGAATTTGAGAGACATGCTGAAGGCACCTACACCAGTGATATCACCTCTTATTTGGAAGGTCAAGCTGCCAAAGAATTCATTGCTTGGTTAGTGAATGGACGAGGAAGAAGAGAGTAAGAATCCATCCATTCCTATTATTAAATTTTGCTTTGCTTTCAAGGTTAGAAATCAAATCTGATGAAATCTTGATGTATTTTTGATCATTCCTACTGTACTTCACGTTTTCCTTTTGTAATAGAAGATACTGTGTGGCTGTTCTTAAGTTCAAACATCTTAAGTTATTCAAACATCTTAAGTTATTAAGTTCAAACATAGACTGAAACAAACATGTTCAGTATACTGTTACACTCTTAAAGGTCAAATTATATTTAAGGTCAATATATTAAAACTAAACCAGAGTTTCCTCTAATTAACACCTTTTCCTCATCACATAACATTGCTTACAGTCTCCTTAACTCTCACAGAGATGAGTCATGTTAGTGTCATCTTAAATTTCCCTTTTTCTCTGCCTCTGTAGTCAATCATTTCCTCTGCAATATTTCCATGATGAAATTTTTAACAATGTCACTGCCACCACAGCCATTTTCCATGCTCTGGTGATCATTCCCAGTTACTGATGTCTTCTTTTGCTCTTCCTGTTATCCACAAAGTCTTCACAAATTGTAGCATCAAAAATAACCATAATTTCCTACAGCTTTCCCTTATTTTCCTTTTTAAAGCACCTCTACTTCTTTTGCTATAGTTCACAGTTTCCAAGACTCAGCTCCATAGTTTTGATTCAGGTACATCTCAGACTTTTTCATTATCTTGCTCTCCATATATTCAGTGCAAATTTCTCAAACCTATTCACTTCATCTGCTCACCCATGATTTTGTATCCTTTTCATGAGACTTACTCTTGGAACAGCCTTAATTTCAGGCACTTTCTGTCTTATCACCATTCCAAGTCTGTGCAGTTAGGAGTTACATCACACACACACCACTCTCTACCTTTTAACTGTTCTGTACTTTTTGTGCCTTTAGACTGTAAGCTCTTCGGGGCAAGGATTTCAGTTCATCCTATTATTATATGTTTTGCTAGCTGTAAAGTACTATGTAAATCTCTCATATAAAAATAATAAATAACAATAACAATAAAATATAATCTATAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011104:ENSGALT00000038393:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.370
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0012315=Hormone_2=WD(100=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACAAGGACAGGAGGACAA
R:
TGAACTTAAGAACAGCCACACAGT
Band lengths:
346-1921
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]