GgaINT0048960 @ galGal3
Intron Retention
Gene
ENSGALG00000013233 | LOC395762
Description
NA
Coordinates
chr7:19050262-19050592:+
Coord C1 exon
chr7:19050262-19050358
Coord A exon
chr7:19050359-19050436
Coord C2 exon
chr7:19050437-19050592
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTACACTTCAATTCTTGCAGATT
3' ss Score
7.64
Exon sequences
Seq C1 exon
AGAAATAGAGTTTATGAAAAAAGAGGAGGATCATTCAAGAGTACTTGAAGAGAGAGACCAGAAATATGCAGAACAGCTGAAAATGTATCAGGAAAAG
Seq A exon
GTAAAACTGTTATATTTAAAAACAAACATCTGCCTTCTTGAGGATTTGTTTCTCACTTCTACACTTCAATTCTTGCAG
Seq C2 exon
ATTTCAGAGCTTGAAAGTAAACTAATAGTATATGAGAAAATGCCATATATGTTTGGAAGTGGGAGTTTATTGGAAGATGGTTGTCAAAATCCAAGCCAGCATAATGAGCAGTCAAAGATGAGAGAAGAGAATGAAAAAGAAACAGAATCAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013233:ENSGALT00000029971:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.280 A=NA C2=0.486
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTACTTGAAGAGAGAGACCAGA
R:
TGCTCATTATGCTGGCTTGGA
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]