RnoINT0116468 @ rn6
Intron Retention
Gene
ENSRNOG00000052113 | Ppp1r9b
Description
protein phosphatase 1, regulatory subunit 9B [Source:RGD Symbol;Acc:632281]
Coordinates
chr10:82814865-82816731:+
Coord C1 exon
chr10:82814865-82814961
Coord A exon
chr10:82814962-82815147
Coord C2 exon
chr10:82815148-82816731
Length
186 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
CTCCTCTCTTTGTTCTCCAGATC
3' ss Score
11.21
Exon sequences
Seq C1 exon
GGAGATCGAGTTCCTGAAAAAAGAGACCGCCCAGCGTCGGGTACTGGAAGAGTCGGAGCTAGCCAGGAAGGAGGAAATGGACAAACTTCTGGATAAG
Seq A exon
GTAGAGCCCTGGGTGGCCTACAGAGGGAGCAGCATGGAAGGTGGAATCCAGTACTCACTCAGTCAGTGTTTGGAAAGGCTTGTGGTGCTGGCTGGCAGCTCAGGGTCATAGCCGGGTGGGGGAGGGTGAAGTTGCAGGATCTGTGCTCAGTGGTCAGGCCTGATACCTCCTCTCTTTGTTCTCCAG
Seq C2 exon
ATCTCAGAACTGGAAGGAAACCTGCAAACACTGAGGAATTCCAATTCTACTTAACAGGAATCCTTGACTGGACAATGATAACCCCTCCATTATCCTTACCCCCTGTCCTCAATCCTCACCCCACCCCTACCAGCCTGGGGACAGGTGCCCCGACTTCCCCTACTCCTCCACCCCATCTCCCCCAGCTTCAGGGACCAGAGGGCCCATATTACAGGCCCCTTTAGGGTGGCCAGGGCAGACAATGCTGGCTGGAAGAGTGGCCTCCTTGCCCTGTGGGGCTGAGGCACAGAGGCCGAGAGAAGCTAAGAGCTGGCCTGGGTGGTGGATGGACACAAGGACCTGCAGACCAAACTGCCAGACTTTATAACCTCCAGCCTGTGTCTCTGGACCGGAGTGGAGCTGGGGCTCTCCCAGCATCTCACCACTTGGAGGCTGCTCCCTGCCCACAGGGTCCGTATGGCCCCTGGGCCTCTTGACTTGAGATTCTTGGCCCCTTCCTCTTCCCCATCATTGTGCTGTCTGTTGCATTCTGGCCTCCAACTTGGAGGGATTGCCTCAACATCTCCCACCCCTGCTCCCCATCCCAGGAGGGATAGAGCCCACCCTTGAGCCGGAGGCTGGGCCTGGTCCTGCACTGATATCTCTCCTATCCTTCAGGGGGGAAGGAGAATGTGACTAGGGGAAAGGGTAGTCCAGGACACCTGGAATCCAGCCCCCCTTCCTAGGAAGGGCAGCAGCCCTCAACTTCTCCGTGTGCCTCCCCTCTCCCAGGTGCCAAACAGCCATAGGCCTCCTCCTGGAACTGCCCTGAGGCCACTCTGGGGTTGGGGGTTTCCTTGGTCTAGCCTAGGAATGCCAGGAGGGAGGGAGGTCAGCTTAGGTGGTGTGCCTGCAGAGCTCTCACTGGAGAGCTAGGCCCTACCCAGGGCCACACCCGGAAGCCTTGTATTAACATCAAAGAGACTCAGCCTCCCCTCCTCCACTCCCCCACTGTTTTCCAATGTTTTCACTGGAGGGCAAAATTTTACTACTCATCTTTCTGGAGACCAGGGCTGCTTACTGTCAGCCTGCTTTCTAAGTGAAATTGACTCCATTTCCCCACGTTAACCCCAAATTGGGGCTTGGACCAAGGGAGGTGAGAACCCTCAGGTACCCTCCCCTTTCAGAATCCATCTCTTGCCACTTCCACATACCACCCCGGCCCTAAGCCTAACTTTGTTTTATTTTTTTTTTCTTCTTTTTAAAACAACCCAGTTCTATCCTTTTCGGTTTCTCCTAGTCCCCTGTAAATAGACCATACCATCAATCAGTATTTCTTGCCCCTCTCTTCCTCCCCTCGACGTGCCCCTACTCCCCCGAAAGAGCTGGCTGTCACAGTGCCCGGCCCCTGCACTTCACCCAGGCAGATGGAGGGGGCGGAGCCGGGTGGGCGGGCCCTCGGTGTACTTCCGGTTTTGACCGGCAGCGCTCCTGCCCCGCCCTTGGAGGACCCCGTCTCTGTATATAATATATATATGTATGTATTGTTCCTGGTTTTGTACGGACCATGCCCTCTGTCAGGTCGTCCCCATAAAAGCAGCCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052113:ENSRNOT00000089497:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTAGCCAGGAAGGAGGAA
R:
GCCTGTAATATGGGCCCTCTG
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]