HsaINT0130755 @ hg38
Intron Retention
Gene
ENSG00000108819 | PPP1R9B
Description
protein phosphatase 1 regulatory subunit 9B [Source:HGNC Symbol;Acc:HGNC:9298]
Coordinates
chr17:50133735-50135649:-
Coord C1 exon
chr17:50135553-50135649
Coord A exon
chr17:50135385-50135552
Coord C2 exon
chr17:50133735-50135384
Length
168 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
TACCCTCCTTTGTTTTCCAGATC
3' ss Score
11.46
Exon sequences
Seq C1 exon
GGAGATCGAGTTCCTGAAAAAGGAGACTGCACAGCGTCGGGTTCTGGAGGAGTCGGAGCTGGCCAGAAAGGAGGAGATGGACAAGCTCCTGGACAAG
Seq A exon
GTGGGCCTGGGGCGCCCTGTGGGCAGGGCCCAGTGGAGGGAGCAGCATTGAAGCCCCTACCCTGTGGGTCCTGGAGGGAGGGGATGCCATGTCCTCACCGGGGGGCGGAAGGGGCTGGGATCATGCCTGGTGTCCAGACCTGACCCCCTACCCTCCTTTGTTTTCCAG
Seq C2 exon
ATCTCAGAACTGGAAGGAAACTTGCAAACACTGAGGAATTCCAATTCTACTTAACAGGAATCATTCCATGACTGGACAATAATTAACCCCCCTCCCATTGTCCTCCCTCCCCTGTCCTCAACACCCCACCCCTCCCCCTTCCAGCCTGGGGACAGGTGCCCCGACTCCCCCCACCCCTCCACCCCACCTCCCCCAGCTTCAGGGACCAGAGGGCTCATATCACAGGCCCCCTTAAGATGGCCTGGGCAGACAGAGGTGGCTAGAAGGGCAGCCTCTTTCTTGCCCCATGGGGCTGAGGCACAGAGGCCGAGGGCTGCCGAGGGCTGGCCTGGTGGTCGACGGACACAAGCACCTGCAGATCAAACTGCCAGACTTTACACACTCCAGCTTTTGTCTCTGGACTGGAACGGGGCTGGGGCTCTCCCAGCATCTGCCAACTGGGGGCTGCTCCCTGCCCATGGGGCACCTGGGTGGCCCCTGGGCCTCTTGACTTGAGATTCTACCTTCTCGGCCCTTCCCTCTCCCCCCATCATTGTGCCGTCTCTGTTGCATTCTGACCCTCCCGCCTGGGGGGTGGGGGCGTTGCCTCAACACCTCCCCCATCCCTGTTCCCTGTCCTGGGAGGGATAGAGTCCACCCCAGAGCCCGGAGGCTGGGCCTGGCCCTGGCCCTGCACTGATTTCTCATGTGTCCTTCGGGAAAAGGGGGAGTGAGAGTGGGAAAAAGGGAGAGTTCAGGACACCTGGTCCCCAGCTCCCCATTGCCTGGGGCAGCAGCCCTCAATTTCTCCTTGTGCCTCCCCTCTTCCAGGTGCCAAATAGCCATAACCTCGTCTTGGAACTGTTATGTGGCCTCTCTGGGGTCCAGGTTTCCTGGTCAAGCCTGGGAATGCCAGGGAGGAAAGGGGGTCTGGCTACAGCGACCCTGGTCTTAGGCAAGGGGAACATTTCTCCCTGGAGAGTCAGGTCCTATCCTGTGCTGCCCTGTCTGCCCAGCCCAGGGCGATGCCTGGAAGCCTACTGACATTGCAGGGAGTCAGCCTCGCCCCCACCCCCTACTGGTTTTCCAATGTTTTGACTGGAGGGCAAAATTTTACTACTACTCATCTTTTTGGAGACCAGGGCTGCCCTGCTGGCAGCCTGCCTTCTAAGTGAAATCGACTCTGTTTCCCCACTTTAACCCCAAATTGGGGCTTGGACCAAGGGAGGTGAGACCACCTCCCCCAGGTCCCCTCCCCTTTCAAAATCCATCTCATTTTGCCACTTCATGCCCCTGCCCTAACTGGGTTTTTGTTCATTTTTTAAAAACAGACCACCCATCCCATCCGTTTTGGCTTCTTGTCCCCTGTAAATAGACCATGACTTCGATCAGTATTTCTTGTCCCCACCCCTTCCTATCCCCAGATGTGCCCCCATCCCCTGAAGGAGCTGGCTGTCTCAGTCCTGGGCTCGCGCACTTCACCCCGGCAGATGGAGGGGGCGGAACCGGGTGGGCGGGGCCGCTTCGGGCTGCTTGGGCCAGCGGCCACCCCTGCCCAGCCGTCGGGAGGGCCGCATCTCTGTATATAATATATATATGTATGTATTGTTCCCGGTTTTGTACGGACCATGCCCTCTGTCAGGTCGTCCCCATAAAAGCAGCCCCCAGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000108819:ENST00000612501:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.588
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGATGGACAAGCTCCT
R:
ATATGAGCCCTCTGGTCCCTG
Band lengths:
248-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development