GgaINT0048960 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:17176397-17176761:+
Coord C1 exon
chr7:17176397-17176493
Coord A exon
chr7:17176494-17176571
Coord C2 exon
chr7:17176572-17176761
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
CTACACTTCAATTCTTGCAGATT
3' ss Score
7.64
Exon sequences
Seq C1 exon
AGAAATAGAGTTTATGAAAAAAGAGGAGGATCATTCAAGAGTACTTGAAGAGAGAGACCAGAAATATGCAGAACAGCTGAAAATGTATCAGGAAAAG
Seq A exon
GTAAAACTGTTATATTTAAAAACAAACATCTGCCTTCTTGAGGATTTGTTTCTCACTTCTACACTTCAATTCTTGCAG
Seq C2 exon
ATTTCAGAGCTTGAAAGTAAACTAATAGTATATGAGAAAATGCCATATATGTTTGGAAGTGGGAGTTTATTGGAAGATGGTTGTCAAAATCCAAGCCAGCATAATGAGCAGTCAAAGATGAGAGAAGAGAATGAAAAAGAAACAGAATCAGTACAGGAAAGACTAAATTCTTCAGAGATGTTAATTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013233:ENSGALT00000021611:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.562
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTACTTGAAGAGAGAGACCAGA
R:
TGCTCATTATGCTGGCTTGGA
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]