GgaINT0049486 @ galGal4
Intron Retention
Gene
ENSGALG00000011778 | ITGB5
Description
integrin beta-5 precursor [Source:RefSeq peptide;Acc:NP_989814]
Coordinates
chr7:27408058-27412078:-
Coord C1 exon
chr7:27411993-27412078
Coord A exon
chr7:27408263-27411992
Coord C2 exon
chr7:27408058-27408262
Length
3730 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
GTCTGTTCTTCACCTGCCAGGAG
3' ss Score
7.62
Exon sequences
Seq C1 exon
GTCTCAACCTGTGCACGAGTGGAAGCGCCTCATCCTGCGAAGAGTGTCTCCTCATCCATCCCAAATGTGCGTGGTGCTCCAAAGAG
Seq A exon
GTACGTTCCTTCTTCGGCTCCTTCAGCTGCCTCCCCCTTTGCATGGGGCACTGCCACTGCATGGGCTCAGTTGCAGGGAGCTTTGCTGGAAAGCACGCTGCCCTGGCTGCCATCCCAGTACACGCTGCGTGGCCTGCAACAAAGGTAAATCCCCTCTGTGAGTCTGCTGTGTTGTTTCAGGAGACTGCCAGCGCTTCTGGTGTCTGCACCGTCACTGAAGGCAATGAGCTGTGCAGCTTACCAGCGTGCTTTGCAGCAAAAATGCATCCTTACGTTTTGGGTATCTTGTAGTCTGAAATCATCTCCCCTCATCAAATAGAGTGGTTCAATTGGAATAGACCTACAAAGATCATCGTGTCCAACTGCCTGACTGCTGCACAGCTGCAGCCGTCCAAGGAAAGCATCTTCGTGCTGCTATAGTACCACATTACCTGACAGCAGAATAGCTCCTGTGCTTTTTTTTTCCCCAGTGGGATGAGTGATGCATCGAAGGGAAAGGGTAAAGCAGTAGACCTTGCTTTTGAGACATCTTGTAAACAGCTGTAGGAGTTCCTGTTCCAGGCAGCTGATCTGCGGTGTGATATTGCATCCAGGAGCGCTGGCTATCGCTTATGGGTACCCAATAGTTTGCCTTTTAAAAAAATAGATATATTCAATTCTTGGCATCGAAAGACAAGTTTTGCAAATGCTACCAGTGGAAAGGTTGATCTGGTGGTCACTGTGACCACTAATTGTACGTCAGCCCGTGGTATTGGCAGCTTGACTCTTTATCTTGCAAACGGAAGCATTCCCAAACAAAATAGTTTCCAAATGGAGTGGAGGGGCCGAGGGACGGAAGAGGAGTGTTTACAAGGAAGTTCCGTAATCCTTCCTGACCTTTGGCCTGGAGCAGCTATTTAAAAATGCACTTCCAGGTATTTCTGGCCAAGAGCCACGTGTTAAAAAGCCGCTGTCCCCGTTACAGGCTGCGGGCTGCAACTTAATGAGCTAACTCTGTGTTGGTTTATAATGTGATGCCTACGAAAGGCAGAGCTGAAATAGGCTCATCTATTTAAATCACACTTGAAAGAGGAGGTGTAGAACGTGGCTGGCTGTCTCCTGGGCGTGCCTTGGGGCAGAGCTGGCAGGGGAAAATACCTGGCGTGTGCACATGGTGTGGATGGATGTACATCCACCCATGGGTTATGTATGCAGGTATATTTGTGTGTGCATGCAAACCAGGGACGCTAATGAATCCTATCGGTTAAAGTGAAATTTCCTCTTTGGTGAATTGAATTCTCCCATGTTTTCCGGCGATGCGCTCGTACCGCGTGCTTTGTGATTGCAGGACTTTGTGCCTGAAGGATGAGGAAGGAAAATGAAGGGATCTCCTGGAGGGAACATCTCAGCTTTCTAAGTGAAGAAAGAGAGCGTAGCTTCTGCTGAATTAATGCAGGATTGAATCGATTAAAGCAAAAACCATAGGGAATAGCTTAGGACATGTGAAGTCAGAGTTATGGATAGCCAATGCTGCTCTTGCATGAGCCAAGCAGTTTGTCTTAAAACTTTCAAGCTGATGAGCATGTAATTGTCACGTTGTTGGCCTAATCTCCATTAACTTCTATCTGCTTGCATGCATCGCCTTTTGCTTGCTCATTGGTGCACAGGCTCAGCAAGCAGTGTGAGCCAATACCAAGAGCTGCAGGGTGCAGTCTCTGAGCAGATGCCATTCACGAGCCAGTGAAGCTCAGCAATTGTCATCCTGTGGCAATTCCATGGGGCCGGTTTTAGAAGAAATCTACGCAAAAAATAGGTCAGGAGCAGCAGAGATAGGGAGCTAAAAAAGCGCAGAGGTGCTGCTGAAGTGAGAGCTTTTGCAGTTACCATCAAATGGTGTTCTGCATCCCCTCAAGAGCTGGGTTCTTCCTCTCGACTTTCTCCTGAAGAGGGGCATCTCCTGCCCAAAATGTGGGCTGAGGTGGCTGAAGTAGCCTTGAGGAGGTGGAAGCCCATGAGAGCTGCGTGCCTTGTGTTGCTGGTGGCTCGGCTTGGTGGGACAGTCAGAACTGGGAGCTGAGAATTGCTGTAAACATGTACCCAGAGCCTTCCTCCTGGTGCTGCAGGATGTGCTGCAGGGCTGATAGATGGTAAGGAAGCATCCTCCTTTTCCTCCTCCTCCAAGGCTTCATTGTGCCACCCCATCCCAGCCAGAAAATCAGGTCCCAGTTCAGAGCCCTTTGAAGTCAAGCCGTTCCGTGAACATCAAAGGGTTTTGGAGCAGACCTCAGAGGTGACTGGAAGTGCTTGTCAAAGGCTGGCTTCTCGCTGATTTAATCATAGAATATCCCACGTTGGAAGGGACCTGTGAGTGTCATTGAGTCCAACTCCTTTAAGGACTAATCATGTCTGAGATAAGCTCTTCCCCACGGCTGCCCTAAACCCTCTGCTCTGCTGGGCGTTGCTCTTGGTTGGGAGGGACTCTGCTCTCTATTTTGTCATGCTGGAGATGATTTACACAGTCCCAGTCCTCCTCTCTCTCAGTCCATCTGTTTACACGGTGCGTTCCAGGAAATTCATGTCCACATCCATCTGATGTGCCGTCATGTAGGCTTGGCATTGCTGCTCCATGATGGAATGCAAACCTTGCATTTTTCAAATAGTGTTCAGGCCTCGTAGTGAGGAAACGCAGAGGAAATGCTCTGTATGTGTCCCAGGACCTGAAGTTGTCCTTGGGGACACTCCCGAGCTGTGTTTGACATCAGTCAGACAACCTCTGCCTCCCCAATGTTTCCCCTGTCGCTGCTCTTTGACAAAAAAATGGGATTTATCCAACCCTGCTCTGCTTTTTTGGCTGTGTGGCTGAAGGAGGGGCTGTGAGCATCTTCTCTGCATGATTTTGTGTGATTTTTAGTACAGCAGCTTAGCCCCCGAGCAGAAGATGGTTGTGTCTATTGTTATAGTACAGAAATAAGCAGAAATCTGCTGTTGAAAACTGAGTAAGCTTTGGGCAACTTGCTCCTTTTTTGCCTTTTCAAAAAGAAAACTAAAACCAGCACGCTAACAAATAGGACGTGCTGGCTGCCAAAGGCTGCATTGTGAGGCCAGGCTGTTCCTGAGTGCCTGCCACACACAATGCCCCGTTGTGTGCCATGGTGGGGGCCGGCCGGGGGCTGCAGGAGGGCTGGGGGAGGCACGGGGGGGAGATGTCCCTGTTCATTGCAGGGGAGGTTGGACCAGATGACCTTTAAGGGTCCCTCCCATGATACTGTGTGATGTGGGGAGCTCTGTGTCAGCTGCATCTCCAGTCTGCTCCCTCTGGTTTCTTGTCCAGCCTGCATCTGATTCGATGTAACACCTCCCATCAGCCCTCGTCCAAGTCCCTTATTCTCCAGCAGTTTCCCTAGACAGCCTGCTCACGTCACAGCACTCCAGCTGTTCTCCAGCCCGCAGAACTCTTGCAATGGCATTTTTCCTGTGCGATAGTCTAGGGCCCTCTTTGCAATGGTTTGAGGTAGGGGTACCATGCTGCTGGTGCTGGGATGTGTGGTCTCACCCAGGCAAGAGGGGATGTATGTCCCTGGAGCCCCCAGGCTCATGCTCCAGCTTGCACTTGACCCTCTAGCTTCTCTTGGTGACAGTTCTGTGTCCTCTCTTCCTTTTGTCAAGCTTCTCCAGGCTCATGCACGCATGGAAAAATGGACCTTCTGGTCTTCTCCTACCCCTTCCAATCTGTCTGTTCTTCACCTGCCAG
Seq C2 exon
GAGTTCGGCAGCACGAAGTCCGTCCCATCGCGGTGCGACTTCCTGAAGAACCTCATTGCCAACGGTTGCGCCGGAGCCATCGAGAACCCGCGCAGCAGCAGCAGCGTGGTGAAGAACGTCCCCTTGAGCAGCAAGGGCTCTGGGCAGACCCACCTGGATGTCACACAGATCACCCCGCAGAAGGTCGCCCTGAGTCTTCGTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011778:ENSGALT00000019224:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=PU(4.0=58.6)
A:
NA
C2:
PF0036213=Integrin_beta=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]