GgaINT0049541 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:18106069-18107580:-
Coord C1 exon
chr7:18107400-18107580
Coord A exon
chr7:18106220-18107399
Coord C2 exon
chr7:18106069-18106219
Length
1180 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
ACACACATGGCTTTTTGCAGGGC
3' ss Score
5.82
Exon sequences
Seq C1 exon
GTCTGTGTTCAAGCCATTCATTTTTGTGCCTGGAATTACTGAGTTATTAAAAACTAGCTCCCCCACATTTGGTCCTGATGACCCAGTCAAGAAGCAACCACGTTTTCAGAGTAAGCCAGATCGAAGACATGAGCTCTATAAAAAACATGAAAGTGCTGCTGTAGTTATGGAAACTATGAAG
Seq A exon
GTATGTTGATTAAATTAGATTTCAGTCCAAGCAGGTGGTTTAATATAAGCTTCTTGCTCACATTTTGTTAATGTGATATCATTAAATGCCCTTAGATGACTGGCGAAGAACATGGTAGTGCTCAAGAAGCCAGTCATTCTTGGAATCTGGCAGGCATATGTTTCTAACACTAAGAACTGAAACTAGTTGTACCCTTATGTGTAGCCCTAGAGAAGTATCTGTGCTGCTTATCTTGCAAAGAAACAGGCCATGTGTATGCCTGTACTAGTCAGACAACAGGGAAATCGTTGAGCAGCTGCAGGCAAATACACAGCTCCTAATACAAGTACTTAACACTCTTCAGGGCCCTGGTCTCTACCAGCAAGGAGGTCGTGCCTTTTACTATTGCTTGGTATGGACAGACTCTCTTATGCATGTCATGGCAGACAACCTTAGGAACAGAACCTCAGTTTGAATAATCCAACTTCTGTTTCTATTTTTTCTCTTACTCTCCTGCTTCCCCCAGAGCTCTTTTCCCCACAAAATCAGCATCTCACTGACAATCGTGGCAACACTGTTACTAGTACATCTTCTCAGGATGCTGTCAATGCTAAATTGTACCAAATACTAAAACCAGATATATTTAAGCAGCATGTTTACAACTTATAGGTTGTAGGTAGCTCTGGACCCAACAGTTACATGGATCCTAGTTTTGCTGATCTAAATGGTAGCATGGATGTAGCAAGCACTATAGAAATATCTGAAATACACAGAAGTTATTCTGAAGCAGGCAAAATAACAGCATTAGGCAGTAGATATTGAGGAATTTCCCTGGACATCAGAAAAGAAAAGAAGATCACAAAGTTACTTGGGCACAGAGGTAAAACAGGAAGGCAGGTACTTCTAACAGTAGTGTCTCTCCTGTTTACACAGTTAACATGATCTAAAAAACAGAGAAGCCCACTGAAGTTTTGCTGGCTTTAAATGCCTGGATCAGCTCCCCTCCCAGGCACATTAGTCGAAGTATGTAAGGGAAGTGCAGAGTTTTCTAGGTATTAGAAGAGATCTAAGAAAATTTGCTATAGTGCTAACTTCTACCAATAATTGTAGGGTTAAATAAGAACAGTACAACAGCATTTTGTGGGGGTGAACACTACATATTTTGTATAGCTTCTAGTGAAACACACATGGCTTTTTGCAG
Seq C2 exon
GGCAAAGGCAAAAAAATGCTGGAAGAGATACAGACGCTGGAGAAAAGGAAGATGAGTGAAATGGAATCAATCCTGCAGAATGGATATCCTGACATTAACCAACCGGTTAACCTTTTTTCACAGTGCATAGATGAAGAACTCAAAATATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014270:ENSGALT00000023082:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.492 A=NA C2=0.275
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGTTCAAGCCATTCATT
R:
TTTTGAGTTCTTCATCTATGCACTGT
Band lengths:
326-1506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]