GgaINT0049598 @ galGal3
Intron Retention
Gene
ENSGALG00000011141 | E1C6K8_CHICK
Description
NA
Coordinates
chr7:23389245-23393815:+
Coord C1 exon
chr7:23389245-23389340
Coord A exon
chr7:23389341-23393725
Coord C2 exon
chr7:23393726-23393815
Length
4385 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTTTCCTCCACTGTTTTCAGAAC
3' ss Score
9.92
Exon sequences
Seq C1 exon
GAGTATCCCACAATTGGACAATTAATTGACAAACTTGTGCAAAACAATGTTTTGGTAATTTTTGCTGTCACGAATGAACAAGTTCACACATACGAG
Seq A exon
GTGAGTAAACTAGAATCTTCACTTCTCTAGTATGTGCTTTAAGGTTCACTATTTCTCATAGCTGATACAGTCTTTTCAGTATTAAGGAACCAATTCTGCAAGATATTTACATAATAAAAATATCTAGGTAATTATATATCAGAGTCATAGAAAGGCTTTTAGAGAATGTTTCTTCATATATTGATTTTGATGTCCTTATGTTACTTTTAAACTGGATTTCAAGGTGAATCACACTAATTTTCAAGTCAGTAGACAAGGACTATCAAATGAGACATTTCTACACTATTTGGAGCCATCTCTGTGATTAGCTGTCCTTAGCTAGCCTCCCAAATACAAGAGGCTGAATGTCCATTAATCCATTAATAAAACAAGAATGCGTTTCTGACAAATACATATATCTTAATGCTCAACTCTGAAATAATGTGGTGGTGTTTTTTTTAACTGGTCTGAGAATTTTATTTACTTTTCTTTCAGTACTTATTAGTTCTGTTCTCCATTTCTGTCTTCTGTTCTTTCTGTGGCACAAGGAAGACTTTCCAGTGCTTATGTGACTGAATCCAGTTATAGAGCTGTCTTGAGTAAAGATCATACTCAAAGTGTTGGACAAAAGTTGCATGAGTGAGATCTTTCAGAAACTGATTCTCAGATTGCAACCCTAGAAATGAAAGGAAGCCCTCTTCACCTTCAAGCACTTTTAAAAAGTATATTGAATTCTGAGCTGAAGAGTGAAAATTAAAATCCAGAGTAGTAGAAAGCAATCACTTACTAATGAATGCAGTGGGAACCTGCATAGATGAGGTTAAATTTTTTTTGCGTTAAGTAACTTTTGCTAAATCCCATTATTGCTCAACCATTAATAGGGTCCCAATTAATAACAATGAAATATTTTCACCAATTTCAATAGGAGCTGCAGAAATAGAGGCTGTTCTAGGAGGTTCTTTGGAAGCGCCTTTCATTTGCAGAGCTATATTTTGTCCCAAAAAACCTTTTCTCTTACTGATGGCATTATATTTTCCTTTAGAAATTGCAGGTGGTCACCCTCAGAGTTGGCCAACAGTGTTCTTATCAGTGGTTTTCTATTTCAGTTTCCCGTGTCAGTGTTATACCAATATCAAAGTTATCAAATGGCACCCTTTGTTCACTGGGAACACTAAACGGAGATTTATAGCTAAAGAAAAATGCAGGCCATTGTTAAACCAACTGCAGAATTTTTTGTTCTTGTTACTTTCTTAGTTAGAAAAGAAAAAAAGCAGCTATCTTCTATCTTGTAGGGTATAGAGAATTCCCATTGAATATATTCTATCTGCTTCTTTCATCTTTTCAGTACTGCTTTCTGTCACTTATTTGGATTTCTATAGTTGTTCTGCTCTGCTTTCTATTCTGTAGGTGACACAGAAAATCAGACAAAGCAAACGTAAAATTTATATGTAGTTCTCAGAATGCAGGCTTTTTCCTTTCATGGGTTGATGTAGGATGTGCAAACAGGATTCTAGTTTATAATACACATGCAGTTATCCACACTTAAGAGTGCAAAAAGAGCAAAACAAGGCAGTGATATCTATTCTCGAGTTAAGGCCACTGCTGACAGAGCATGGAAGAGCTGGGAGAGGAGGCTGAACTGGCACTTGGGCATTGCCATTAAACTACGCTTGTTCTGGCACTTTCTAAAAGCCTCAGTGATGGAGTCTCCTCATTAGAGAACCTCCCAAACTTGATTATCCCTTAATATATCTCCATATGCCTCATCTAAAATCTTCTTGTACCCAGCATCTAATTATATCAGATCCCAAAATGGACCGCTATTATTTATAATTCAGTTCTTAGGGATGCGCATGCATTAAAATGACTATGAGGACTCGCTCAGCATCTCTTTAAATAAACTTGATGGATTCCAGTAGTCTTAAGTTCAGTGTTCAGACTGGCAAACATATATTTTATATTTCTAGCCCTATATAATCCCCAACAATTTAGCCCAAAATAACTCATCCATTTAATATTCATGATCCTCTTGAACTAAATTTTCAGTTAATTTGCACAGAAATGTATACATACCATTGAACACACAAATAATATAGATTGTACATCCACAAGATATATGCACCTGTAACATAGCAGGTTCTAGTTTTGATCCTCCATGCAAGCATGCATCCACTGCATAGAAATAACCAAAGAGGATGAAGGTTGAGGTCTGATACTCTCCTTGTCAGGCTGGCTGTGTTTTAAAGCAGTCATGTGGAAACACACGTAAGCACACTTGAAATTAAATGCAAGAGAGCAAAAGTTCCTACACTGAGCCCTGATCATTTGAGATTTGATTTTTAAAAAGAATTAATTAAAAAAAAAAAAGGATAAGTTATTTGAAAATATATTCACATTTAACATTTTATATTATTAGTCTCCTCTGATCCTTACCAAAGCAGCAGGGAATGCATTTATTCTCTAAAGCTATTCAATTAGAAAATATCTGTGAATGATACGATGACATTTTTATGAATTTTAAATTCCATTTTGGTATAAAAGAAAACACTCCAAGGTTCCATCAAGTAATTATTATTATTGCTGATATTATTTGATTTCAAACAGAATTCTTTAAAAATTTATTCAAACTAGATGAGGGGGGAAAAAAACCCTCTTTAGCCCTACCACAGTGCAACGTGACAATGGCAGAAAATGTTCTTTTTTGAGTATATAGATATATTTATATCACAAGAAATGACAGCTTGAAAATTGAGCTTTTTCAAACTGTATTTCACTGCTGAAAATTGGACTAAAAATACTCCATTCTCCAATAACCCCACTGAGCTCAAAGATATAACTCTCAAATTTCACTAATGTGAATGAGAGAATTGCTAGAAAATGCAGTTCATCTTCTAATGAATATTTGCTAAAAGACTGAACTCAGTGGCATCCTCTGGATAGCTTTATGGTGGTAACATGTAATAGCATCATTCTACCTCTGTTAATGGTTAAACAGAAATATGTGCTGAGAGGTGGGGTTTAACCAGGGAACTGGAGGGTCACACTTGCACTGGGTGTGCACCATCATCCTTGCATCAGTGTGCGGTGAAGTTTTCCTCTAAGAGGAGAGAGAAAGTCTTCAGAACAGAATACCTCTGCTGTTTGTTTGGCATGTCGCAGATTAAAAGGGTGCTAGACTTTAAATTCCAGGTTTATCGTGTCTCTCTCTATATATAATCAGCTCACGGGAGGTCCACATCTACAAAATGCAGCGTTTCAATATTCTGAGAATCCTTGAGAGAGCACTAAGCACAAGAGGAGTCAGGAATGCAAAGTCACCAGCTGTAACATAAAATGCAGTTAATCCTACTGATTTACAATAGCACTTCAGAATTGCAACGAATGACAAGTATTCCATACATAATGTATAGAGTAATCACAGTGCTTTGGGAGACATGAAGTATAGGAGGGATATAAGGCTATCAGATTATCCATATTTATTAATAACTCTCTGGATTTTTTTCAATTAAAATAACAGCACTGATAAGATAAATTGCAGAAGACAAAATGAATGCTACAAGGTGTATTTTTACCTGTTATCATTTGCTATTTTCAAAAGGCATAGGTACAAGCAAATGAAATTCATGTAGTTAACAATCATCTGTTGGATGTTATTTTAGCATCGCAGTGCAATTTAATGAAAAAGGAAAGGAGAGCGGAAAGGAAAGAAGCAACTTTCCACTGAAATCAATTATTAAATTGGTACTATGTTATTAACATTAAGTCAACATACAGTCAGCTACAGCCCCTGGTCACTGGGAGATGTGTGGGGTGTTACAGCAATCGAAAAGCAGCAGCAGATTTTTAAGGGTCTTTGTTCAAAGTTCTTGTAGTCCTTAGTAGAAATCTCTTAACCTCTTAACAGAAACCTCTCAGTTTCTATGTCCTCCCATATAAAAGTTCAAGATGTTCAGCTGCGTGGAAAGGCAAAAAAAAAAAAAAAAACCCAACAAAAAAGTGGTGGTTGTTACTGAATGTAGTGTCCAAGGTACTTGAATATTACAGCAACAGCCGAGCAGCTGAATCTACTTTTTGGTTTGATTTTGTTTTTAAAGAAAAACCCAACTGTTGATAGAGTATATATTCATTCTAAGTTAAAGGGGAAAAAAAAGCTAGAAAATACTCCAGTGTCAAACTTGCAAGCACACTTAGCATCTTATTTCCCACTAATTGTCAGTGAAGCTGACGCTTCTCCATAAGACCTCTTCCAATATGACAAGTGTGCCATTAGATCAGCCACAGTCCTTGAAAACATCACTGTTATTTATTTCAGTTGGCTCCACTGTAATTCATTCATTTCCAGATGGCAGCTCCTTGTCACCTACCCTGTCAACTAGTCTTTTTTTCTTTTCCTCCACTGTTTTCAG
Seq C2 exon
AACTATGCAAAGCTTATTCCTGGAGCTACAGTTGGTCGACTGCAGGAGGATTCTGGAAATATTCTCCAGCTGATCATTGCTGCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011141:ENSGALT00000018170:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.3=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]