MmuINT0084207 @ mm10
Intron Retention
Gene
ENSMUSG00000026971 | Itgb6
Description
integrin beta 6 [Source:MGI Symbol;Acc:MGI:96615]
Coordinates
chr2:60634580-60650069:-
Coord C1 exon
chr2:60649974-60650069
Coord A exon
chr2:60634670-60649973
Coord C2 exon
chr2:60634580-60634669
Length
15304 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGTTCTGTTGTTGTTTACAGAAC
3' ss Score
10.53
Exon sequences
Seq C1 exon
GAATATCCAACTATCGGCCAACTCATTGATAAACTGGTACAAAACAACGTGCTACTGATCTTTGCAGTCACCCAAGAACAAGTCCATCTGTATGAG
Seq A exon
GTAAGCAAGTAAGAGCTGAGAGATTCCTTCAAGGACATTGTGCACCATGAAGACCAGTGGAATGTGGGCACACCCATAACAACAATGAGAAAGAGTTGGAAATGAAAGGGTAAATGGGAGAGTGCAGATGCATGGGCTGGGGGTCATCCACTGGCATTAAAACAGGCACTTTGTTTGGCAAGGGGTTAACAGGCAACAGAGCCACTCACTGTTTGAGGGCAGTGACTGAATGTTTGCAAACATAGAAAGTCTCAAGCCAGAGGTGCAACTCCAAGCCTTTGAGAAGTGGAAAGTTAAAAGGAAAACAGTTATTAATTTGAGCCAAAATATAATCACACACACACACACACACACACACACACACACACCCCAGTGTAATTGTGTCTGTATTTTGGGTATTTGGAAGGAAGCATCAGTATGGGAAGGAGAGTCTTTCAATAGGTAAAAGATGCTTACAGTCTGCCATTGACAATGTAAAAACACCTATGCAAATCTAAGATTTCTGTGGTCCATTTACAACCTAAGAGCAACAAGATGTCAAATGCTGCGAGCTGAGATAACTGTGGGTGAGGAAAACAGAGATGTCTCGTATGTAGCTGCGTAGAAAGGCCCCAACTTCAGAAAACGCAGATGATCCTTTCTATGTAAAAGTGTCAGATCCGCCTAAATTCAGACTCTGATTCCCCATTTCTTCCGAAAGGACCTCTTAATGTGCTTGGTGACTTTTCAGGGCAAACTCCAATTATTTCCCAGAAGGCTTTTATGAAATGCACTCACTTGTCCAACTGGCACAGCCCATGAACTTGCATCAAGTTCTATGGAAAGGATCCAGGAGGAGATGCTATCTTGCATTTTTAATGAGGAGGGTATTGTTGTGCCAGGTGAGGGTGCCTTCTTTGCACACTCAGAAGTCCATTACGATCAAGCTCCATCCTCAGCGCTTTTGTTTCTCCATTCACCTGATCTGGGCTTTTTTTCTCTTAAGTCTCCTTAATATGTGATACTGGTTTCCACCGGTTTTAAGTAGTAGAGCTGCAGTAAAGATAGATTACTAAGTACCTTCAGTACAATAGTGAGTCTATCTTGCCTCTGATCCCGAAGGCTAACGTGAGAGGACCTAGTGGGTCACAACACTTCCTCCCCAGCAGGGCTGTGGCTTAGAACCTGGAGGGGGAGCTGCACAGAACTTGCCTGCAAAAGGGAGTCTGGGGACCACGATTGATGACCATGAACATAGACTTCCATTATTCACATTGGCAATAGTCTTTAAGACTCCCAACGTTTAGATGCCTCCCCCAGTCTGCCATTAAGAAGACAGAGGGGGATGAAAAATAACTGTGTGACTAAATGGAATCTGTTGCATTCAAGTTAGTTGCACATGGGTCCCCGGCTGCAGAAGAAATGATCATTTCCAAGGAAAACACCAGATTATAGCTGCCTCTAATATAACAGCAGGACATTTGTTTTGTCTGCCTACTAATCTCATTAGGAGAAGAATTTATGTTCTGTCATGATCTGTGATCTCTGCCATCCGGGCGCCACTACATTCAAAGGGACATTTTCAGGGAGCCACAACTCAGCAGCCCAGGTCAGCAGCCCACTCTATGACTGGGTCTCACTGTTCCATTTTCCTTCTGATGGTTCATTGTGCCATCTGTATTAGAGGGCCAGGAGGCAACTTGGTTTGAAGATAATGACAGCACATGTTCTGACCTGAAGGTCCCACATAGCATGCAAATGCTGATCTATTGTTTTATTGATAATGAAAACAGAAAATAGGCCAATAATGACCTGTGTTGCTTTTCAATTTAAACCTCTTAGAACATGCATTATGTGTGCTAGAGGCTGGGGCTACAAAGTATGGGGGCATGCTTATGAAATAAAGACCATAAGGACCAAAGAATTACTGAAAAATAAAGCCAGCAGTGGGATAAATTAAGGAGCCAAGTGGTGAGAGCTAATGGAAATTCCAGAAGGCAAATAATTTGCTTGAGTTATGCAGTAAAGATAGTTCTGTGTCTGCACAGCCTGCAGGGGATGGGTGAGGTTCAATGGTGGCTCTGTCTTAGAGCAAGAAAGATTTATGTTGCCCAGTCATGGACGTCAGGAAAAATGGCTGTTGTTTCAGTGAGCTGGGTAGGATGCTCTGGACTGTGCAGGTATGGAGGGCTGCTGTGGGCGCACTGTTGGAAGGCGCCGAGCAAACAAAGGGAGGGCTTCAGTAAGCACTTTCCTTTCAGTTCAGTATGACTGCGTGTACATCCCAGACTCCAGCAAGCAGACAATTAGGAACAAACTTATTATTATAAATAGTTTCTTGTTCATCCAATTACAGAGTCCAAGAGATAATGATGGATAATTGGCTGAGCACTAGGTAGTATATTATATCCAAGGACTAAATGCTATTTAAAAATCAAGATTCGATTACCCAAGCTAAAAAAAAAAAAAAAAAAAAAAAGTTTATACTTCAGTCTGTTGGTTTTGGATGCTCCCTCTTAGTTTACATTAAGACAGTATCAGGCTTAAAGTCTAAGTGTCTAAGTTGAAGGGTCTTTCCTTTTTTGTGAGAAACGATTATTATAGATCAACATTTTTACTATACCGTCAAATCATGTTATTAATTGCTGCATGTTATTTGCAAGGCTTTACGATATCTATATATTTTCAAAATGTCTGCAGCTAGCTGGGAGGGTAGAGGTGTGAAGGGCTAGCAGCAATGCCAGTTCCAGGAGCTCGTGTTTATGGTGGGAGCCTGAGGCAATGAGTCCATCTACAGCAGGCGTCTCCAGTTCCACCACAGTCCACACCCTCCCTCACTGATGGCCTGTGGTTGCTAGGACAGAATGACATGTCTAACGCTTGAGCACAGAAGTACAGACAGGTCCTTACATCTTCAGAGACCCCTTCCCCTAAAGACAGGAAGCTCTCAGCTGCTAGATCTTTGAAGAGAATGGTGTCTTATATGTCTTTCTGTTTAGGCCAAGTCTCAATGATGTTGTTAAAGGAATATAAAAATGCAATAAAAATGGGGACTTGGGGCTTGGTGTGACAAATGCTTGTCAGGGTTGAAGAAGCCTGGGCACACAGAGCAGGTGTGGGCTCCTGACCATTGCTAGGATGCACTGCAGCCTAAGGTGTCCCCTTACATTCCGTCCTGGACCCAGATGGCACCAGAGAGGAAAGCTGAGCCATCCCATCTGTCTCAGGACAGATCTGCTGGAGAAGCTCTGCAGCCTCCCTTCTCACTGGGCCATAGCACGGAGACCCCCTGAGCAATTATCCACTGGCACACATTTGATCAAATAGCAAGTCTGAAGAGCTGCCGCGACATGTTGCAAGCCGTGTGTTCTTGCATGGCTCAGGATAATCACGTCCTGTCCATAAGTGTCCATGTTTCAGGAATCAATAACCCCGGTTTTCTTTTTCCCTTTCTTCCTTTGACTGTTCTTTGAGCTAGTCACTGTAGCAAGGGAGGGTCAGAGGCATGGAGAGCTGGAGGGAGATAAAATAAAAATGGGACCTCCTTGCTGTCTGTTAATTGGTTCAATTGTGGTTTTGTTTTCTAATGTTCTTGTTGGAAAAGATCAAAACAATTCCAGTTCAATAGCAATCACTTGATCTCTCTGCCCTCAGTATTTGTAGACTAAAAAGACTAGGCCCAGATGACCTCCATTTTAACCAGTCAGTGACCAGCCCTGGAGCTGGCCATGAATTCGGATGATCTCCACACAGATAGCAAGTCTGGCTGATCTTAGGACCTACTCTAAGAAGCTATTCCCCATCCTCTCAGTCTCATGCTATAATTGGATATTCCAAACTTGGGATTTTAATGCAAATAAAATCATCAGGGAGAAAAGGCAATTTTGTGATTATGTGACATCGCCATGGAGTTAATAAATTGCTCTTGATTCGAGTGTAATAGGGAAGATGTTTGATTTCTCCTTAATTGATGGTATCTAGGAACAAAGCCCGAGGAGAGCCAGCTGCCTACACTTTCCTCATTAACTGGAATATCCCTCAGAAAGAAAGGATTTGGAAATAAAACTCGTGTCCTCAGACTCGTAGGCACCTACTGAATTAGGCTAACCAGTAAATCCCAACTCTGCCCAAGCATCAGTAGTCACTGTTAGCTAACACATAGGGACTTTTCTCTTAAAGGATCGAAAGGCTTGTACTCCAAACATAAGAGAGAAGAAAGACACGAGTTTGAAATAGAGCCTTCATGAGATTCCCTTACTGGGTCCTGTCATATACAAACAGGAGATCTCGTCACTACACAGGCTGAATGTTTGAACACTAGAGTAGCACCTAGGATGTCTAGGGTATCATTATTGGGCTATGATGCTGCTGACTACATAGTCTGCCACCCACTCATTCAGTCATCAGCTATCTCTTGAGCACCTCCTAGAAGACCAGCCAGAGTGTGACCACAAGAAAAAGGTACGATGTCTGCCTCAAGAGGTCTCAAGCATTACTAGCAGACTTGTAAATCAGTTATGAACCCACAAAAATAAGGTGGGAGCACTGTAGAGACCAGGAGGAGGGGGACGGCGTTCTTTGACAGACTTTTGCTAATGAGTTTGTATGTTTTTCAGTCAATCAGTGTTTGTTTTGTTATCTATTCATTATCTTTGTTAGAAGAGGTAGCAGATTAGTTGGCAACCATAAAACTGGTTTTGATGCCAACAGTAGCACACCTTGCCTTGTGCCTGGTGGGGGAGAAAGCTCAGGCCTGGGGATGGCATAGAGCAATGACCATGATGACGAAGAGAACAATGAGTGGCCACCTGGAGATTGAGAGTTTTACACTTGCTTTATCACTTAATCTCCATATATCACCACAGATTAGCAAAGCAACTTGTATGGGGCAGAATTTTGACCCAGATAACCAGAGTCTGTAGCCACAACCACTGGGAAAAGTCACAGTTGACCCACACCCAAGCTGTGGTAGCGGCAAAGCACAGCAATTCCTGAGCACTAATAGGCCACCAGCCAAGAGCCTTTCACCGACAGCTTTAAACATCTCTGTAAAGGCCCAGAGCCTAAGGGTGGAACAGAGCTGTGTGACCCAGGAACCAGCAGAGGAACTCTCTACATGACAGTCTTCAAGGCCAGGCAGTCTTTGACCTAAGGTCCTTTATTGTTGCCATTAGTTTAGATGAGTGAAGCAAGTTAAGACTCTATAGACTTGAATTGAGCCCAGTGATTCTTCCCTGTGATGGAAAGAAGCCACCTAGCCAGGAAGCACGATTTCACTGGGTTGCCATCTAAACCCATTTTTCACATCTAGGATTCTCATTATCTCTGGTTCCAATGAGAGAGATAAAATGAGGACAGGACTCTACGAAGGCTGTGGATTTATTAAGTTGACATAATTTAAGCATACAGAAAAGCAGGGTATGCTTAGAGTGGCATGGCCACCGCTAAGTTACCCCCAATCTAATAATGCCATCATATTGGCTCCCTCTGAAGAAGGAAAGCTTCTCATGTGCCCACTGACTAACCTCCTGTCTGTGTTCTCTGCCTTCCTCTCTGTGAGGCAGCCAGGATCCTGAACATTGTGTTCATCATTCTTACACTTGTTTTTACGCTATTAAAATATAGGCGCATCCATAACTGATTCTGTGTTAATGACATGCCAGCACATTTCACTGTGCAGATTTAATTTCTCCCATCTTCCTCTCGCTTGATTGAAGAACTGAACTCAATGACCTACAAGATTTAGCAGCCAATGATTGATTCTGGGAAAGGAGGAATTCTAATGGCTTGAGGGGGGCAGGGAGATATTTTCCTTATATTTTCATATTGCAGTAAAAAGCATGTATGATATATACTTTATTTTAATTCATTTTTCAGTGCATAGTTTTGTGGCCTTAAGCATATTGGCCTTGCCATGCTCAGCGGTCTGTGTTCGATCCAGGGAGATATCTGTGGTGTCACGTGACTCCATCCACATCTTTCTGTAACTGAGGGCACTCAGTTATGTGCAACTGTGCAGCACTGTGGATGATGTCGCTGTACCCTTCCCTGCGTTTACATCATGGATCCACACATCTTTAAGTGAGGCCTCTGAGTCCCAAGGAAATGGCATCTTCAAAGTTACCTTTATAGTTTGGGCAAGTTACTCTTGTATTTCATACTGTCTTACCAGCAATGAAGGATGGAAGCTAAGAAAAACTAAACCAAACCAAACCAAACCAAACCAAACCAAACCAAAGCTTCTCTCTTTTTAGTTACAAACTTGATGCTGCATTTGCACAAAAGAGAGGGAGGGAATGAGATGCAGAAAAGCAGGAGGAAAAAAAAGTCACTCATAAACCAACGCCTCAGACAGAGCTAACCACGGTTGACATTTTAGAATAAGCCTTTCTTCCTTTTTCTTTGAATGTATTTGCATATTTTAACATAATTGCTACCATACTGTACATATTAAGTATGTTCCCATTTTTTAAATGAGTTTATATGTTTATAGTCTTAGAAAGGCATAAGAATTAAATTGTATGAAATTATACATCAATCACTTTTATTAACAAGAATAACATTAGCTCGAAATCAAGGTTACTCTACAATATTCTAAGCCGATGGTTTTTATATTTATAGGATTTCGGCTGTAAAATAAAAACAAACTGAGCCACACCTGGTGGCACAGGTCTGTGTTCCCAGCTGAGTTAGAGGCTAAAGTAGGAGGGTCACAAGTTCAAGGCCAGTCGCAGCAACTTTTAAGAGCTTTCCTCAAAATAAAAAATAGATCTTAGATGTAGCTCAGTGGTAGAACACTTGCCAGTGTTAACAAAGCCCCCGAGTTCAGTGTTTGGTATTACCAAAAGTAAAAATAAGATGGTGTTTGTTCTTTCTCCCCATTAGCCCCTAAACTATAGAGGTAAGTCACTCCCCCCATCCCAGACTTAGTTTTTCACACGTTCTCATGTTATGTGCTTTCTCTTTGTTTCCCATGAGCAAATTTTAACATTCATAAAGCCAAGTAATTACTTTTAGCATCTATTTTCACATCTCTGACCGTGTCGCTTTGCTCAGGACTTCACTATCTGTGGACCTAAGTCTGCACCTCAGAGTGCTGTGTTACTCCGCTCTCTGCTTTCTCTAGGCATTCTCATGGTTGTAATGGCTATCGTGTGTGTCACTGCTGGGATGGCCAAATCCCAACAGTGCACACGGGGCACTTGCCAACCATATGGAGCAGTCTAACTGGCCTAACTGTAACGGATTATCTTCCACTCAGTAGGCACTGCCTTTTCAACACTCACTAGAGCATTGACCCAAGAGAGCAAGTTAAACCGGTGGCCCACTGGACATAAAGCTTGGGAGAAATATGTATTTTAATTTCATGCCCAATTTTCAGAGAGAACCTAAGATATACTAAAAGGGCCTAATTCTAATAAGAGTTGAATACTTTGTACTCCCTGCGATATTGAATTGTCAGAAAGTAAACAGAAAAATTAAAGAAAAGAAAAACAGCTGTTGAATTTGAATAGTTTGGACATCCTTCATTCATTATTTCAGGGGCTGGAACACTTATTTCATAGGATTGAAAAGATTTTTTGTTCATAAGACGCAGAATAGGTAGTTAAAATTGAATTTCAAATAAACAACAAATCCTTTTTAGTAAAAATATGTCCCGTGCAATACTGATGATATCTTAAATTAGAAAATGTTCATTGTTTAGTGGAACCCAACTAAAACTTGCATATTGGTTACCTTTGTACCACTATGGCGACAGCTCCCAAGGAAACAGGTTGCAAAAGGACAGAGTTATTCTGGCTGACAGTGTCAAAGGTTTCAGCCCATCACAGTAAGAAAGTCTAGAGGAATTCCACATGGTGCAAATGGCGTTCACATCACAGAAGAACAGGAAGCAAGAGGAGGCAGGTGACAGAGGCTACCCACAACCTTCAGAAACCCCTCCCTAGGACCTTACTTCAGTCATCCTGCTCATTCCGCCCCAGCCACTGCCATCTCCTAGGGGTTCGACAACTAGGCAGGTTCCACCTGCCAAACAGCACCAACCACTATAGAACAAGAGTTCAAAGCAGAAGCCTGCAGGAGTCATCAGGGTTCAAACCATACCATGCTCTATTTTCTTTGGGAGCCTGTTGGTAAGGGTCAAAGGTCATCCAAGCCTTCTGAGTTATGAGCATACAGCTCTACCATACTATATGAAGATTCATGGGCTCCTGTTATTATAAAAATGGGTGACAGGTCATAGCTTGCTCATTCATTCATTCATTCATTCATTTAATAGTTTGTGTGCTTTATACTTACGGGGCACTGGGAGAACAGAGAATATAAGGCAGGTTCTGTCCTTGTGGGCTTAGTCTACTGAAGGGAAGTGGACAAAAAAAAAGGACAAATGAAGAAATAACAAAGAGTGACTTTTAAATGTGCTGCCCAAGGAATGGAAGGGAATGGTGTTCAGCAATGGAGAACAGCCAAATGGAAAGACTGAGAGTTTTCCATGAAGAGGATCTTCAGAGAAGACTCCATCCAAGAGGGGTTGTGCTAGCAACCAGAAAGTTGAGAGGCATCGAGAATAGACACATGCAAAGGCCCTGGGGTAGCAAACAACCCATCCCCAGAATATACAAGGAACAGAATAAGAACATTCAAAAGTCAGTCAGCTTGGAGTGACCTAAGGTAGAAGGAGAAGGCAGGTCCACGGAGAGCAGACACTCAAAATATACCACTTTTGTAGCAAAGCAGAGATGCCCACACAAGCGTATGGCTGGCTGAATACTGAACACTTCATAAGACTAACATTATATTATAAGATATAATGTCCTTATTTTCCAAGTCACAGACTATTGTTTACATATGGTTCTCAATTGTTGGTTCTTATCAGACTGTCCTAGGCAGCTTTTAAAAGCCAAATTATTACTCAGGCCACATCCTGACCTGATTAAATTGACACCATTGGATCAGACACTGAGGTCAGCATCTTCCCATTTCCTCTGTATAGCCAACCATTCTGCACCTTATGAACACGCAGGCTCTGATGCAGATGTCTATGTGATATGTCTATAACTCAGCATGTGTGACAAGCTCCAAGGAGATGCTGATGCTCTGGTCCATTTGCAGCACTTGGAGTGCGGAGGCTCATGGCTCTGTAGCAGTCCTTGCACACACTCTGTTTGTTATCTTCTTGTCCCCTCTATAACCTTCCTTCCAGCGATTCTTCAAAGTTTTATTACCTGTCCATTGCTCTGCAGAGCACACATGCTGTTACTGAAACCCATCTCCCCTTTCATTTTAAAAGGCCTTTCTAAAGCTTAGAGAGTCTGGACGTTCATTCTGTAGCCAAGGTGTGCCCTCCATCTCTGAAAGCAGGCTAATCTCATTAAGAGGAGCCATGAAGTGTCCTGGGTAACAAATACTCCACACAGCCCCTTTGTTCTCAGAATCTCCTCCACTCGGATGCCTGTGCGCATCTGTTTGTCTCGTAACAGTCTGCACTGCAGCCCACTCGTTTTTCCCTTATCACAGTGATTGCTCTAGAGTACTCGCTCAGCTGTGTGTGTGCTACTGCTCTTGGCTGACATTCCGGGCAGACTGGGAGAAAGACAGGTAGTGCTCAAAAGTTCCAAGGCTGACTACCTAGTCATTGCTGGTACCGACTTCAAGATCAAGCACCTGATTTAATTAGCACACTCCCATCTTGCCTGCCTGCCTGCCTGCCTGCCCGAGGAATGCTGACAATGGAAAGCCTGAAGTCAACGCAGATATCATGCAACCCAGAGACAGACAGTCATGCCACTCTCTTGCCAGAAACAATGACAGGTTCCTCTTGGAATCTTGGGTGTCCTGGTAACAGAGGGAAGCTTAGGGGTAAACTTTTGCATAATACCCAGAGCCCTGCGTTTACTGATAATGGACAATGAGAACTGGGGAAATAAAAACCTCACAAGAATGAATGAAAGGCCCTGAAGCAGAAAGCCTTTGCAGTTGAACTCGGAATCATTTATGTCAGCAGGTCCAGGCTCCAATTCTGGAAGAATCACATGCTTTTCCACAGAAGCAAGGCTTTACCACCAAGGACAAGATAAATAAGAGAGTACTGGTTTCCTGGGTACTACCCCATCTAGCCCCACCCAGCTTTTCATTCCTTCCTACGTTTCTTTTGAGCCGCAGCATTCGAGTTTGACATTCCTGCACTGGGTAGGAAAGTGTTTTAAAATCTGAGTCACTAAGCATACATAGAGGGCATTGAGATCTTAACTTTCTAATGAGACACCCTTGCTCATTTGCTGTTGGCATTTGTACCCATCCCTCCCACGGCAACCTAATAGAAGACAGCGAGCGTTGGCCTGGAGCCACAGTCTGCTTCCACCACCTAAACTTTGGTGCCTGGGCAAGATACCACCTGCCCTGATTCAACTAAAGGTGTAAGGCTAAAGCGAACAACGCATACACCCCTCTGTTCTGCACGATGCCCCCCCAGAAAAGTATCCAACTCCCATTACTAGAGATGTGACCTTAAGTAGGCTCAATGGGGACAAAATCACCATGTATCACACATGGACTCTTAATCTAACAGGAACAGTGTTCTTTCATGGAGGCACAGAGTGTCAGATGCTTGAGGCGAAGGCACCGTGGGACAATGGAATTAGGGAATCCGTGTTTCTGGTGGCTTGGCATGGAGTATATTTTCAGGTGCTTCTTTGCCGTCTGCATGTCTTCTTTGGTGAGGCATCTGGGAGGGTCTTCAACTCCTTTGAAAATAAGATTGTTTTCTTGTTGAGTTTTAAGAGGTCCTCCGAAGTAACAGAGCTTTATGTGATGTATCCTGTGGCTTGTCTTCTCGTTCTCTTAAATTGTCTTTTCCGTATCATAACTGTTTTTCCTTACACCTAGCTCATCTTTCATCTACCTCGTGGATCAATTTTTTCAGTATGGTAGCAAAATGTCATCACCCAAAGTCAAGACCATCTAAAATTTCTCCTGTGATATCTTTTATGAGATATGTTTTTCAGTCTTTCAAGTAGGCTAGTCTCCTTTTGGAGTTAGATTTTACCAAGGGTGGGATGCACATATGTGTGTAGATTCGTTTGTGGTGTGCATGGACAGTTGTTCCAGTACTATTTGCCAAGAAGACTACTTTTGCTTCTTCATAATGTTCTTGCTTGTTGGGAAAGATCCATTGATTTTACTCTGTTAGCCAGTTTCTGGGCTTCCTGTTCTTTTTAATTGATCTATTTGTCGATACCATACTTTTTGAGGACTGGAGCTTTATAGTAAGTCTTGAAGTTCACTTCCTCTACTTCAGTTGGCTATTCTGGGCCTTTTGCTGCTTCTTATAGACTTTAGCATACGTTTATTGAGATCTACAAAATAACTTGTTTGTACTTTGATGGGGGCAGCATTAGATCTATAGATGGAATTCTTCCTTTGAAGTCTTATTCATCACTCTTTCTATGGGTAGTGATTTTTGTTTTCTACTTAAAACTTTTATTTTTTTTTTTAGCCCAAGCCCAGGAGGGTTGTGGTGGTTTGAGTGAGAATGTCTCCATAGGTTCACAGACTTGAATACTGGGTCCCTAGTTGGTGGCATCATTTAAGGGGCTTAAGAGGTGTGGCCTTGCTAGAGGAAGTATGCCACTTAAGGGCAGTGAGCATTGGAAGCTTTGGGCTTCTTCCTACTCTCAGTGGGTATATGCTATGTGTGCACTATAGAGAGAAAAATATAGGATGGGAGAATACTTATTAGGAAGAAGTAAAGATAAAGAAGTGAGAAAAATCTTTGTTAGATTAGATGAAATATTTGTGAGCAGATTAGATCCGAGCCAACATCCTGGTAAATGCATTTCAGTAAACTATAGTTAACAAGTATATTTTGAGGTAGACTACTGATACAACGATGAATAAGTGTTGCCGAGATTAAAAACAGTGCTGTGCATAAGATAAAGTCGTGGTACCCGTGATACATTACTGAGGCTGCATAGAGAGGAACAAGCAAGCACAAGCCCAGACGGAAACCAGCAGTGGCTGCTAAGCACTGAGTTTCCTAAGTTGTTTATGCAAGCTTCCAGGGGATGTGTGGAACGTTGATAACTGATTTCCTCCATTGAACAAGAGACATGAAGAGTGTGGTCAGTAGAAAACCATGGCCAATGAGCTTGGAGGTAATGAGGAGTCTTCGAGACTGTAGCCATGTTACAAGAGGAGGATGTGGAGAGATCTAGGCTTGAATCACCACCCTCCAGGGCAAAAAAGCAAATCAGGAGGGCCTGAAAGACGACAGTTAATACTAAACTTCCACCCAGAAGTCAGTGGACCTCTTGAGAGTTCCTCTAGAGGAAGTGCACCAGAGCAGGAATGGACATCCTGTCAGGAGCTGTCTGTCCCTTGCAAGGCAGAAATGTCAAGAGCCCTCCCATAGCAAAGAATGCTTACCAAGGTCCTCAGTCATTCTATCAGAGGAGAAAGCCACTCCCTGCCAGTCCACAGGTGACATAGGTAATCATGCATCCCCCTGCTCTTAGCCAAGCCAATGTGCATACCTAAAACTGGTCTGACAGCTGGGCACTGAGTGCCACTGAGTGTGGAGATGCTCTCTGAAGAGGAGGTCGGAGTGTTAGGGGATAAATTTAGACACGGTGTTGTCCGATGGCTGCCGGCTGAGCGATCCCTTGCCACGTGCAAACACGCACTGTTAAGCAAACAAGTCATCCTTTTTTGAGATGGAAGCAGAGTGAACAAATAAATAGGAAAACCCAGGTGATCCAAAAGAGCACACAGCCAGGAACTCCTGGGCGGTGCAGCAGGGGGATCCAAGAAGCTCTGTAATTAGGATAATCCGCGGAGGGAGAATAGAGAGTCTGCGGCCACACGTGAGACTGCATTTCTAATGAGCTCCTGTGCCATCGTGTTTATGGCCTTCACTGTTGCTGACACCACTGTCTTACTCATAGGGCTGTAATTCATCAGCAGGCGTGAAAGGCAGCTCTTCTCTAACTTTAAACACGTTTAATCACAACAGTTTACAACGTCGCTTTAAGGTTTTAGCGAAGGAAAGGCATTTGATACGTACTTACAATGATCATAATGCTCTACAGATTTAAAGCCCAAGTTTTCACAGTGTTATACCATTAAGCCAAATTGTCATGTTTCTAGTTAATTATTTGAAATAGTTTGGGGGAGAAATCAGCATCCAAAAATTAATTAATAGTTTTCCTCCGTATAATTGCCAGTGTCATCACTGGCTACTGCTACTGGCTGCCAGCTTCCTTTGTACCCTGGCTCTAGTGGCAATCAGCAAGTGTGATTAACATTAAGCACTTGTCCTAATAGCCAAATGCCAAATGTCATACCGCATGCAGGATGGTAATTACACATTAAGAAGCGGGTGGGATCAGCATCATTAGCCAAGAATTAACCCCAAATGCAGAGCCACTTGAACTGGTGCTTGCAAAAAAACCACAGCATCTCATCCTTGGAGATACTAAAATGTCCTTCAAGAGTGGCAATTCTGTGCCCAGCTAAGGACCTTGAGATTCCTTTTCAAAAGGATCCAAACCTTTCTTTGTCTAGAACAAAGGTTTCCGCAACCGTCTCTTCCAAGATCAGGCAAATTTGCACACATCCCCCGGCTCCACTCCAGTGGAATCCAAGCTCCTATGTAGGTATTTGCTGTTAACCGCAGTCTCATGCTTCATGGCCCTTTGTGACATGTGTTTATTTGAAGAGGTAAGTCGGCGAGGCAGGGCTGTCCTCAGTTTTCACAAGCTCTCCCTTACTCTGGGAAATGTAAGGGGCCTTCTCCAACATGCTGTGATTGGAAGGAGTAAGATGAGAAGTGTCACCTGCCACTGCTGCCCTTGGCCCCCTCAATACTAAAGTACAGCATCAAAGTGGCAGCAGCTGACACATCTGAGGATTCAGATTTCAGCAACTTTGAACATGAACATGGGACTAAGTAGAATGTTTCAACCCCCTTCCCCCCCAAACTGAAGCCCATTGTTTCCATACTAGAAGTGGAGAGAGCTAGGGTTTCCCCAGGTGCATACCGCTGACAGGCCTGGGGGGCCACCAGGTGCCTTTGCATTATGACCTTGGGCCAGCTTCAGGGCTCCTTTGCTTCTCTCTCTTCCCCTGGGTCTGGCTTCTTTAGAGTCACTATCGTAATTAGCGATGACTATTCTAATCGAGTTCTGGGCATTTCCTGAACCACTTCAATGGTCTCTGGAATAAGAGAAAGTCTTAGTCAGGGTTATTATCACTACGATGGAACACCACGACCAAAAGGAACTTGAGATGAAAGGGTTCATTTGGCTTATAAAGTCCATCACTGAAGGTCAGGACCGGCGGAACGCTACTTACTGGCTGATTCCTCAGGGTTTGCTCAGCCTACTGTCTTATAGAACTTAGGACAACCAGCACAGAATTGGCAGCACCCACAATGGGCTGAGGCCTCCTGCATTAATCACTAATTAAGAAAATGCCCTACAGGCTTGCCTACAGCCTCATCTTACTGAGGCATCTTCTCAATTGAGTGACCACCCACCCTTCTCTGAGGACTATAGATTGTGTCTATAAGTTGATCTAAAACTAGCCAGGACAGATAGGGTGTCAAAATTTCCTTGGACCTATAGAGATGCCCTGAATGTATAATTTGATTCTTCTTTGCAAAGCCTAATCTTCTGGCCACACTCCAGGCCTAGAATGTTAAACCAATAGTGGATGTCCTCCCAGGGTGGAAAGGCCATCCCAGGAGAATCGATATAAACAGAGAATGCAAACTAGTCAGGACTGGTTCTAATGAATCACGATGCAGGCAGGAGCAATTCCAACTAGTTCTAGGACTATCCTGACTCCCTACAGGGCTGCTCATCACAAGTAGAAGCAGAGAGTTAATGGAGAGTTGGAGAGTTAACAGCTAACATGCAAGCCTTCCCTCCTTTTCTCCACCAGCTGACCGTTCATTAAGAGCTCTAGACCCAATGACAGAAGCAACCTCGTTCCTTACTTCCCTCTGTGTGCACCAAAATGTGGTTTCTGCAACAATGGGAAAAGAAAGACATTCATGGAGGCCTGCCCAAAACTTCTAGTCAAAGGATGTTACGTAAATCTCATTAGGACTTGAGACTTGACTCTGATGTGGTCTAAATCCCAGCTGTGGAATATGACAAACATAGATTCCCCAGTGGCAACTTAGAGCCACTTGTAGCCAGCATCCTGGGGCTAGTTAATCAGAGGGTACCACTGACAGCAAGCTGAACTTTGCCCTTAGCATTTCTCAGTTACTGTGAACCATCAAGCATTGTCTCATTCCCTGTTCTGTTGTTGTTTACAG
Seq C2 exon
AACTATGCAAAACTCATTCCTGGAGCAACCGTGGGACTGCTTCAGAAGGATTCTGGGAACATCCTTCAGCTGATCATCTCCGCTTATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026971:ENSMUST00000028348:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.3=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(6.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types