GgaINT0049827 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36803539-36804203:-
Coord C1 exon
chr7:36804020-36804203
Coord A exon
chr7:36803632-36804019
Coord C2 exon
chr7:36803539-36803631
Length
388 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCAGTCCTTTCTCCTGCAGGTC
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTGAAATACCACGAGGATTTTGAGAAAAACAAAGGTACTTTCACACCTGTAGTCACTGACCCCATTACAGAACGTGTGAAGAAGAACATGCACGACTTCAGTGACATCAGCTATAGGGGCATTCAGAGACGAGTGGTAGAAATGGAGCAAAAGCGCGTGGACCAGGACCAGGAGAACCTGACAG
Seq A exon
GTAAGGAGAAACCGCAGCACTTCATATACACAAAATACAAGGTGACCTTGGAAAGTGGTTTTATTTAAGCTTAACAGTATCATCGGTTTATATTTATCATTAATTGAAGCTGGTGGTCTTAGCAAAGCCTCCTCTGCCTCTCCCAGCCACGTGGCTTTTGTATATGAGGTGCCAGATTTGGATTGTCATTTCTTATTTGTATTTTTAAGAAGTTCACCTCACGTTTTTCACCAACCACACCTCTGCACTACAGCTTTGATAAGCATAAATTATCAACTCCTGCTTTCCTTTCCCTCCTATGTTTTTTAGTCCCATTTAGGACCACTCTGTGCTGCTCTGGCTCTCCAGGCCCTGCCTGGCTCCATCTCCTCAGTCCTTTCTCCTGCAG
Seq C2 exon
GTCTTCGTGTGTGGCGCACAAATCCCGGCTCAGTCTTTGACTACGACCCTGCAGAGGACAACATTCAGTCCAGGAGCTTACACATGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:139
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.699 A=NA C2=0.531
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAATACCACGAGGATTTTGAGA
R:
TCATGTGTAAGCTCCTGGACTGA
Band lengths:
271-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]