GgaINT0049827 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34676990-34677654:-
Coord C1 exon
chr7:34677471-34677654
Coord A exon
chr7:34677083-34677470
Coord C2 exon
chr7:34676990-34677082
Length
388 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTCAGTCCTTTCTCCTGCAGGTC
3' ss Score
11.66
Exon sequences
Seq C1 exon
GTGAAATACCACGAGGATTTTGAGAAAAACAAAGGTACTTTCACACCTGTAGTCACTGACCCCATTACAGAACGTGTGAAGAAGAACATGCACGACTTCAGTGACATCAGCTATAGGGGCATTCAGAGACGAGTGGTAGAAATGGAGCAAAAGCGCGTGGACCAGGACCAGGAGAACCTGACAG
Seq A exon
GTAAGGAGAAACCGCAGCACTTCATATACACAAAATACAAGGTGACCTTGGAAAGTGGTTTTATTTAAGCTTAACAGTATCATCGGTTTATATTTATCATTAATTGAAGCTGGTGGTCTTAGCAAAGCCTCCTCTGCCTCTCCCAGCCACGTGGCTTTTGTATATGAGGTGCCAGATTTGGATTGTCATTTCTTATTTGTATTTTTAAGAAGTTCACCTCACGTTTTTCACCAACCACACCTCTGCACTACAGCTTTGATAAGCATAAATTATCAACTCCTGCTTTCCTTTCCCTCCTATGTTTTTTAGTCCCATTTAGGACCACTCTGTGCTGCTCTGGCTCTCCAGGCCCTGCCTGGCTCCATCTCCTCAGTCCTTTCTCCTGCAG
Seq C2 exon
GTCTTCGTGTGTGGCGCACAAATCCCGGCTCAGTCTTTGACTACGACCCTGCAGAGGACAACATTCAGTCCAGGAGCTTACACATGATCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:63
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=NA C2=0.531
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAATACCACGAGGATTTTGAGA
R:
TCATGTGTAAGCTCCTGGACTGA
Band lengths:
271-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]