RnoINT0099864 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37665031-37665555:-
Coord C1 exon
chr3:37665372-37665555
Coord A exon
chr3:37665124-37665371
Coord C2 exon
chr3:37665031-37665123
Length
248 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
AACACTGGCTTTCCTTTCAGGCC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GTGAAATATCATGAAGACTTTGAGAAACACAAAGGCTGTTTCACACCGGTGGTGACAGACCCTATCACTGAACGAGTAAAGAAAAACACACAGGACTTCAGTGACATTAACTACCGAGGTATTCAGAGAAAAGTGGTGGAAATAGAACAGAAGCGGAATGACCAGGATCAAGATACCATTACAG
Seq A exon
GTAACTGGGAACAAGGTGACCGAATACCAAATGGAAGACAAAGGACCCAAATCTGAGAACAAAAGCCCCATTAGCCAGTTTGCTCTGAGTTGAGCTCTGAGAAGTATCTTCTGTTATCTTTGTTCTGAGAAGACCAGAACCTAAGCTAAGTAGGAGTAGCCCAGCCTTCCTGTGATTGCTGACACTCTTGTTCTCAAGACACAGATAAATGCTAGAACATTTGTTCTGAACACTGGCTTTCCTTTCAG
Seq C2 exon
GCCTGCGTGTCTGGCGGACTAACCCTGGTTCAGTTTTTGATTATGACCCGGCAGAAGATAACATCCAGTCCCGAAGTTTGCACATGGTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:110
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.613 A=NA C2=0.656
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=17.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATGAAGACTTTGAGAAACACAA
R:
TTGACCATGTGCAAACTTCGG
Band lengths:
268-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]